M5C1000I18Rik Gene Detail

Summary

• Symbol
  M5C1000I18Rik
• Name
  RIKEN cDNA M5C1000I18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642038
  NCBI Gene: 102633151
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:67665995-67667512 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 36.72 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642038	lncRNA gene	Chr9:67665620-67667512 (-)
129S1/SvImJ	ENSMUSG00200044107	lncRNA gene	Chr9:64760237-64761755 (-)
A/J	ENSMUSG00195024695	protein coding gene	Chr9:64498350-64502716 (-)
A/J	ENSMUSG00195027784	lncRNA gene	Chr9:64501130-64502648 (-)
AKR/J	ENSMUSG00220036409	protein coding gene	Chr9:64636332-64640698 (-)
AKR/J	ENSMUSG00220042485	lncRNA gene	Chr9:64639112-64640630 (-)
BALB/cJ	ENSMUSG00180018544	lncRNA gene	Chr9:64620634-64622152 (-)
BALB/cJ	ENSMUSG00180017569	protein coding gene	Chr9:64617854-64622220 (-)
C3H/HeJ	ENSMUSG00175012783	protein coding gene	Chr9:64631481-64635847 (-)
C3H/HeJ	ENSMUSG00175013196	lncRNA gene	Chr9:64634261-64635779 (-)
C57BL/6NJ	ENSMUSG00215019950	protein coding gene	Chr9:64605766-64610138 (-)
C57BL/6NJ	ENSMUSG00215036165	lncRNA gene	Chr9:64608552-64610070 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006781	lincRNA gene	Chr9:64970416-64971937 (-)
CAST/EiJ	ENSTCUG00005031826	lncRNA gene	Chr9:64506986-64508514 (-)
CBA/J	ENSMUSG00210014627	lncRNA gene	Chr9:64707324-64708842 (-)
CBA/J	ENSMUSG00210014036	protein coding gene	Chr9:64704537-64708910 (-)
DBA/2J	ENSMUSG00185034814	lncRNA gene	Chr9:64732336-64733854 (-)
DBA/2J	ENSMUSG00185029249	protein coding gene	Chr9:64729548-64733922 (-)
FVB/NJ	ENSMUSG00205035470	lncRNA gene	Chr9:65044330-65045853 (-)
JF1/MsJ	ENSUMUG00000042714	lncRNA gene	Chr9:64805589-64807112 (-)
LP/J	ENSMUSG00230027257	lncRNA gene	Chr9:64959287-64960805 (-)
NOD/ShiLtJ	ENSMUSG00190024622	lncRNA gene	Chr9:64832441-64833959 (-)
NOD/ShiLtJ	ENSMUSG00190019806	protein coding gene	Chr9:64829652-64834027 (-)
NZO/HlLtJ	ENSMUSG00225046309	lncRNA gene	Chr9:65031920-65033438 (-)
NZO/HlLtJ	ENSMUSG00225046271	protein coding gene	Chr9:65029132-65033506 (-)
PWK/PhJ	ENSLUMG00010027968	lncRNA gene	Chr9:64761249-64762773 (-)
SPRET/EiJ	ENSMSPG00010022851	lncRNA gene	Chr9:65822344-65823862 (-)
WSB/EiJ	ENSIUOG00005028368	lncRNA gene	Chr9:64214018-64215536 (-)

Homology

• Gene Tree
  M5C1000I18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving M5C1000I18Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055125 (Evidence)
• NCBI Gene
  102633151

Representative Sequences			Length	Strain/Species
genomic	102633151	NCBI Gene Model | MGI Sequence Detail	1518	C57BL/6J
transcript	NR_153961	RefSeq | MGI Sequence Detail	1414	C57BL/6
polypeptide	Q3UHS1	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;