Gm10308 Gene Detail

Summary

• Symbol
  Gm10308
• Name
  predicted gene 10308

• Feature Type
  lncRNA gene
• IDs
  MGI:3641943
  NCBI Gene: 100303741
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:91088493-91089391 bp, + strand
• From Ensembl annotation of GRCm38
  

  View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 60.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  17 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641943	lncRNA gene	Chr17:91088493-91089391 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024116	protein coding gene	Chr17:94696688-94697586 (+)
A/J	MGP_AJ_G0024076	protein coding gene	Chr17:91618482-91619380 (+)
AKR/J	MGP_AKRJ_G0024045	protein coding gene	Chr17:93132953-93133851 (+)
BALB/cJ	MGP_BALBcJ_G0024077	protein coding gene	Chr17:91427181-91428079 (+)
C3H/HeJ	MGP_C3HHeJ_G0023842	protein coding gene	Chr17:94060637-94061535 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024522	protein coding gene	Chr17:97946630-97947528 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021961	protein coding gene	Chr17:86560205-86561103 (+)
CAST/EiJ	MGP_CASTEiJ_G0023321	protein coding gene	Chr17:94987633-94988531 (+)
CBA/J	MGP_CBAJ_G0023815	protein coding gene	Chr17:102035962-102036860 (+)
DBA/2J	MGP_DBA2J_G0023944	protein coding gene	Chr17:89980303-89981201 (+)
FVB/NJ	MGP_FVBNJ_G0023910	protein coding gene	Chr17:89520960-89521858 (+)
LP/J	MGP_LPJ_G0024028	protein coding gene	Chr17:95469325-95470223 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023938	protein coding gene	Chr17:101918283-101919181 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024567	protein coding gene	Chr17:93719712-93720610 (+)
PWK/PhJ	MGP_PWKPhJ_G0023066	protein coding gene	Chr17:89707193-89708091 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022877	protein coding gene	Chr17:90478909-90479807 (+)
WSB/EiJ	MGP_WSBEiJ_G0023387	protein coding gene	Chr17:94586776-94587674 (+)

Homology

• Gene Tree
  Gm10308
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• Gm10308 interacts with 58 markers (Mir17, Mir20a, Mir20b, ...) View All

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000071033 (Evidence)
• NCBI Gene
  100303741

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071033	Ensembl Gene Model | MGI Sequence Detail	899	C57BL/6J
transcript	ENSMUST00000095183	Ensembl | MGI Sequence Detail	742	Not Applicable
polypeptide	Q9CVR5	UniProt | EBI | MGI Sequence Detail	141	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 5

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, 2/14/1995;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm10308:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146256	Chr17:91088212-91088215 (+)	-279 bp
Tssr146257	Chr17:91088852-91088885 (+)	376 bp