Gm9951 Gene Detail

Summary

• Symbol
  Gm9951
• Name
  predicted gene 9951

• Feature Type
  lncRNA gene
• IDs
  MGI:3641827
  NCBI Gene: 791287
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:34516416-34524200 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 20.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641827	lncRNA gene	Chr8:34516416-34524200 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007316	lincRNA gene	Chr8:32542338-32552080 (+)
A/J	MGP_AJ_G0007314	lincRNA gene	Chr8:31267032-31274615 (+)
AKR/J	MGP_AKRJ_G0007285	lincRNA gene	Chr8:32253473-32261483 (+)
BALB/cJ	MGP_BALBcJ_G0007292	lincRNA gene	Chr8:31386684-31394314 (+)
C3H/HeJ	MGP_C3HHeJ_G0007235	lincRNA gene	Chr8:32568503-32576949 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007462	lincRNA gene	Chr8:33755138-33766126 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006660	lincRNA gene	Chr8:28267403-28274633 (+)
CAST/EiJ	MGP_CASTEiJ_G0007138	lincRNA gene	Chr8:32019012-32037174 (+)
CBA/J	MGP_CBAJ_G0007218	lincRNA gene	Chr8:35088005-35095566 (+)
DBA/2J	MGP_DBA2J_G0007240	lincRNA gene	Chr8:31244888-31252252 (+)
FVB/NJ	MGP_FVBNJ_G0007261	lincRNA gene	Chr8:30901001-30909154 (+)
LP/J	MGP_LPJ_G0007321	lincRNA gene	Chr8:32495823-32505581 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007238	lincRNA gene	Chr8:34610117-34617715 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007464	lincRNA gene	Chr8:32325386-32334202 (+)
PWK/PhJ	MGP_PWKPhJ_G0007079	lincRNA gene	Chr8:30770976-30778928 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006987	lincRNA gene	Chr8:31584899-31594327 (+)
WSB/EiJ	MGP_WSBEiJ_G0007197	lincRNA gene	Chr8:32493262-32500829 (+)

Homology

• Gene Tree
  Gm9951
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000054618 (Evidence)
• NCBI Gene
  791287

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054618	Ensembl Gene Model | MGI Sequence Detail	7785	C57BL/6J
transcript	ENSMUST00000149618	Ensembl | MGI Sequence Detail	1775	Not Applicable
polypeptide	Q8C9Z4	UniProt | EBI | MGI Sequence Detail	129	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9951:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76858	Chr8:34521788-34521801 (+)	5,379 bp