Gm9885 Gene Detail

Summary

• Symbol
  Gm9885
• Name
  predicted gene 9885

• Feature Type
  lncRNA gene
• IDs
  MGI:3641726
  NCBI Gene: 791275
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:78228348-78230786 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 44.64 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641726	lncRNA gene	Chr7:78228305-78230786 (+)
129S1/SvImJ	ENSMUSG00200035351	lncRNA gene	Chr7:65048637-65051075 (+)
A/J	ENSMUSG00195014956	lncRNA gene	Chr7:69465742-69468180 (+)
AKR/J	ENSMUSG00220040377	lncRNA gene	Chr7:63007726-63010164 (+)
BALB/cJ	ENSMUSG00180013468	lncRNA gene	Chr7:66190854-66193292 (+)
C3H/HeJ	ENSMUSG00175022617	lncRNA gene	Chr7:66960699-66963137 (+)
C57BL/6NJ	ENSMUSG00215035490	lncRNA gene	Chr7:66052685-66055123 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004035	antisense lncRNA gene	Chr7:81139194-81141398 (+)
CAST/EiJ	ENSTCUG00005004442	lncRNA gene	Chr7:69510382-69512826 (+)
CBA/J	ENSMUSG00210024205	lncRNA gene	Chr7:66812038-66814476 (+)
DBA/2J	ENSMUSG00185049057	lncRNA gene	Chr7:71134740-71137178 (+)
FVB/NJ	ENSMUSG00205030560	lncRNA gene	Chr7:66687916-66690354 (+)
JF1/MsJ	ENSUMUG00000031904	lncRNA gene	Chr7:75783136-75785574 (+)
LP/J	ENSMUSG00230015208	lncRNA gene	Chr7:77226660-77229098 (+)
NOD/ShiLtJ	ENSMUSG00190020326	lncRNA gene	Chr7:66955509-66957947 (+)
NZO/HlLtJ	ENSMUSG00225042699	lncRNA gene	Chr7:75463744-75466182 (+)
PWK/PhJ	ENSLUMG00010018056	lncRNA gene	Chr7:65374170-65376608 (+)
SPRET/EiJ	ENSMSPG00010027428	lncRNA gene	Chr7:65793583-65796023 (+)
WSB/EiJ	ENSIUOG00005023294	lncRNA gene	Chr7:67305345-67307783 (+)

Homology

• Gene Tree
  Gm9885
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm9885
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000052629 (Evidence)
• NCBI Gene
  791275

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052629	Ensembl Gene Model | MGI Sequence Detail	2439	C57BL/6J
transcript	ENSMUST00000186234	Ensembl | MGI Sequence Detail	2439	Not Applicable
polypeptide	Q91VZ9	UniProt | EBI | MGI Sequence Detail	37	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 21

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:201479 Srivastava U, et al., Differences in health status affect susceptibility and mapping of genetic loci for atherosclerosis (fatty streak) in inbred mice. Arterioscler Thromb Vasc Biol. 2012 Oct;32(10):2380-6

TSS for Gm9885:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67299	Chr7:78228305-78228334 (+)	-28 bp