G730003C15Rik Gene Detail

Summary

• Symbol
  G730003C15Rik
• Name
  RIKEN cDNA G730003C15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3641700
  NCBI Gene: 100038354
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:59158988-59161300 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641700	lncRNA gene	Chr1:59158988-59161300 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002687	antisense lncRNA gene	Chr1:59068094-59070402 (+)
A/J	MGP_AJ_G0002663	antisense lncRNA gene	Chr1:57013751-57016053 (+)
AKR/J	MGP_AKRJ_G0002643	antisense lncRNA gene	Chr1:58610577-58612944 (+)
BALB/cJ	MGP_BALBcJ_G0002649	antisense lncRNA gene	Chr1:57056563-57058854 (+)
C3H/HeJ	MGP_C3HHeJ_G0002609	antisense lncRNA gene	Chr1:58857478-58859769 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002793	antisense lncRNA gene	Chr1:61402003-61404806 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002340	antisense lncRNA gene	Chr1:52837692-52840063 (+)
CAST/EiJ	MGP_CASTEiJ_G0002581	antisense lncRNA gene	Chr1:57995392-57997655 (+)
CBA/J	MGP_CBAJ_G0002604	antisense lncRNA gene	Chr1:63317110-63319418 (+)
DBA/2J	MGP_DBA2J_G0002609	antisense lncRNA gene	Chr1:56438901-56441209 (+)
FVB/NJ	MGP_FVBNJ_G0002629	antisense lncRNA gene	Chr1:55742499-55744790 (+)
LP/J	MGP_LPJ_G0002689	antisense lncRNA gene	Chr1:59949250-59951558 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002620	antisense lncRNA gene	Chr1:66255215-66257561 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002798	antisense lncRNA gene	Chr1:58519714-58522912 (+)
PWK/PhJ	MGP_PWKPhJ_G0002539	antisense lncRNA gene	Chr1:55779518-55781914 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002493	antisense lncRNA gene	Chr1:58044845-58047141 (+)
WSB/EiJ	MGP_WSBEiJ_G0002611	antisense lncRNA gene	Chr1:58222893-58225968 (+)

Homology

• Gene Tree
  G730003C15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving G730003C15Rik
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000097573 (Evidence)
• NCBI Gene
  100038354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097573	Ensembl Gene Model | MGI Sequence Detail	2313	C57BL/6J
transcript	ENSMUST00000180570	Ensembl | MGI Sequence Detail	2311	Not Applicable
polypeptide	Q3UN03	UniProt | EBI | MGI Sequence Detail	145	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for G730003C15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6858	Chr1:59158981-59159020 (+)	13 bp