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C130021I20Rik Gene Detail
Summary
  • Symbol
    C130021I20Rik
  • Name
    Riken cDNA C130021I20 gene
  • Feature Type
    antisense lncRNA gene
  • IDs
    MGI:3639863
    NCBI Gene: 100504399
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:33641193-33645663 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 22.50 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3639863
antisense lncRNA gene Chr2:33641193-33646354 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003549
antisense lncRNA gene Chr2:32174396-32179557 (+)
A/J MGP_AJ_G0003529
antisense lncRNA gene Chr2:30812717-30817885 (+)
AKR/J MGP_AKRJ_G0003508
antisense lncRNA gene Chr2:31912984-31918147 (+)
BALB/cJ MGP_BALBcJ_G0003518
antisense lncRNA gene Chr2:30928493-30933654 (+)
C3H/HeJ MGP_C3HHeJ_G0003466
antisense lncRNA gene Chr2:31789654-31794815 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003656
antisense lncRNA gene Chr2:33130042-33135203 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003166
antisense lncRNA gene Chr2:29542567-29547734 (+)
CAST/EiJ MGP_CASTEiJ_G0003429
antisense lncRNA gene Chr2:31772420-31777583 (+)
CBA/J MGP_CBAJ_G0003463
antisense lncRNA gene Chr2:34416128-34421289 (+)
DBA/2J MGP_DBA2J_G0003471
antisense lncRNA gene Chr2:30590594-30595759 (+)
FVB/NJ MGP_FVBNJ_G0003490
antisense lncRNA gene Chr2:30476367-30481530 (+)
LP/J MGP_LPJ_G0003544
antisense lncRNA gene Chr2:32085587-32090748 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003478
antisense lncRNA gene Chr2:33970620-33975785 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003659
antisense lncRNA gene Chr2:31794970-31800133 (+)
PWK/PhJ MGP_PWKPhJ_G0003384
antisense lncRNA gene Chr2:30497932-30503088 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003329
antisense lncRNA gene Chr2:31968461-31973576 (+)
WSB/EiJ MGP_WSBEiJ_G0003464
antisense lncRNA gene Chr2:31972840-31978004 (+)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 100504399 NCBI Gene Model | MGI Sequence Detail 4471 C57BL/6J ±  kb
transcript NR_046275 RefSeq | MGI Sequence Detail 3815 C57BL/6  
polypeptide Q3UGR3 UniProt | EBI | MGI Sequence Detail 154 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
Molecular
Reagents
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  • All nucleic 23
    cDNA 23

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Developmental Gene Expression 5
  • Earliest
    J:109564 Li MZ, et al., Molecular mapping of developing dorsal horn-enriched genes by microarray and dorsal/ventral subtractive screening. Dev Biol. 2006 Apr 15;292(2):555-64
  • Latest
    J:206496 Hoekstra EJ, et al., Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/B-catenin signaling activator R-spondin 2. PLoS One. 2013;8(9):e74049

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/09/2019
MGI 6.13
The Jackson Laboratory