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Krt40 Gene Detail
Summary
  • Symbol
    Krt40
  • Name
    keratin 40
  • Synonyms
    Ka36
  • Feature Type
    protein coding gene
  • IDs
    MGI:3629968
    NCBI Gene: 406221
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:99537485-99543158 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 62.92 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    92 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3629968
protein coding gene Chr11:99536735-99543220 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019096
protein coding gene Chr11:102210736-102216407 (-)
A/J MGP_AJ_G0019064
protein coding gene Chr11:97906667-97912342 (-)
AKR/J MGP_AKRJ_G0019034
protein coding gene Chr11:100947599-100953250 (-)
BALB/cJ MGP_BALBcJ_G0019038
protein coding gene Chr11:98418786-98425003 (-)
C3H/HeJ MGP_C3HHeJ_G0018851
protein coding gene Chr11:101093525-101099194 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019488
protein coding gene Chr11:105342492-105348069 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017121
protein coding gene Chr11:95466637-95472321 (-)
CAST/EiJ MGP_CASTEiJ_G0018406
protein coding gene Chr11:102093345-102099011 (-)
CBA/J MGP_CBAJ_G0018822
protein coding gene Chr11:109737745-109744548 (-)
DBA/2J MGP_DBA2J_G0018930
protein coding gene Chr11:97475539-97481220 (-)
FVB/NJ MGP_FVBNJ_G0018919
protein coding gene Chr11:96983258-96989047 (-)
LP/J MGP_LPJ_G0019000
protein coding gene Chr11:102677359-102683028 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018946
protein coding gene Chr11:109399815-109405486 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019529
protein coding gene Chr11:101312219-101317880 (-)
PWK/PhJ MGP_PWKPhJ_G0018177
protein coding gene Chr11:98549401-98555142 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017965
protein coding gene Chr11:101053321-101058953 (-)
WSB/EiJ MGP_WSBEiJ_G0018454
protein coding gene Chr11:101276324-101281991 (-)



Homology
more
  • Human Ortholog
    KRT40, keratin 40
  • Vertebrate Orthologs
    7
  • Human Ortholog
    KRT40, keratin 40
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CK-40, K40, KA36
  • Links
    NCBI Gene ID: 125115
    neXtProt AC: NX_Q6A162
    UniProt: Q6A162

  • Chr Location
    17q21.2; chr17:40977716-40987135 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000059169 Ensembl Gene Model | MGI Sequence Detail 5674 C57BL/6J ±  kb
transcript ENSMUST00000074253 Ensembl | MGI Sequence Detail 1320 Not Applicable  
polypeptide ENSMUSP00000073869 Ensembl | MGI Sequence Detail 439 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 34
    Developmental Gene Expression 6
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
  • Latest
    J:235040 Dauber KL, et al., Dissecting the Roles of Polycomb Repressive Complex 2 Subunits in the Control of Skin Development. J Invest Dermatol. 2016 Aug;136(8):1647-55

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory