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Abca17 Gene Detail
Summary
  • Symbol
    Abca17
  • Name
    ATP-binding cassette, sub-family A (ABC1), member 17
  • Feature Type
    protein coding gene
  • IDs
    MGI:3625331
    NCBI Gene: 381072
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:24264259-24351068 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 12.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    933 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3625331
protein coding gene Chr17:24264258-24351897 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023295
protein coding gene Chr17:23227988-23331034 (-)
A/J MGP_AJ_G0023255
protein coding gene Chr17:22614459-22704648 (-)
AKR/J MGP_AKRJ_G0023222
protein coding gene Chr17:22682358-22772719 (-)
BALB/cJ MGP_BALBcJ_G0023260
protein coding gene Chr17:22795408-22886497 (-)
C3H/HeJ MGP_C3HHeJ_G0023020
protein coding gene Chr17:23021474-23119758 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023703
protein coding gene Chr17:24266029-24358064 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021180
protein coding gene Chr17:20075612-20169593 (-)
CAST/EiJ MGP_CASTEiJ_G0022522
protein coding gene Chr17:22859971-22956873 (-)
CBA/J MGP_CBAJ_G0022996
protein coding gene Chr17:25092459-25191426 (-)
DBA/2J MGP_DBA2J_G0023125
protein coding gene Chr17:22192939-22285088 (-)
FVB/NJ MGP_FVBNJ_G0023095
protein coding gene Chr17:21911819-22000533 (-)
LP/J MGP_LPJ_G0023202
protein coding gene Chr17:23542939-23637848 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023114
protein coding gene Chr17:24811874-24906109 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023741
protein coding gene Chr17:22949338-23050037 (-)
PWK/PhJ MGP_PWKPhJ_G0022271
protein coding gene Chr17:20950637-21040954 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022090
protein coding gene Chr17:20975533-21070126 (-)
WSB/EiJ MGP_WSBEiJ_G0022585
protein coding gene Chr17:23014667-23114565 (-)



Homology
more
  • Human Ortholog
    ABCA17P, ATP binding cassette subfamily A member 17, pseudogene
  • Vertebrate Orthologs
    2
  • Human Ortholog
    ABCA17P, ATP binding cassette subfamily A member 17, pseudogene
    Orthology source: HGNC
  • Synonyms
    ABCA17
  • Links
    NCBI Gene ID: 650655

  • Chr Location
    chr16:2340922-2426699 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035435 Ensembl Gene Model | MGI Sequence Detail 86810 C57BL/6J ±  kb
transcript ENSMUST00000039324 Ensembl | MGI Sequence Detail 5202 Not Applicable  
polypeptide ENSMUSP00000046218 Ensembl | MGI Sequence Detail 1733 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR003593 AAA+ ATPase domain
    IPR026082 ABC transporter A
    IPR017871 ABC transporter, conserved site
    IPR003439 ABC transporter-like
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:107018 Ban N, et al., Cloning of ABCA17, a novel rodent sperm-specific ABC (ATP-binding cassette) transporter that regulates intracellular lipid metabolism. Biochem J. 2005 Jul 15;389(Pt 2):577-85
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/12/2019
MGI 6.13
The Jackson Laboratory