Mir335 MGI Mouse Gene Detail - MGI:3619348

Symbol

Mir335
Name

microRNA 335
Synonyms

mir 335, mir-335, Mirn335, mmu-mir-335

Feature Type

miRNA gene
IDs

MGI:3619348
NCBI Gene: 723930
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr6:30741298-30741395 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 12.53 cM
Mapping Data

1 experiment

SNPs within 2kb

9 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3619348	miRNA gene	Chr6:30741298-30741395 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008891	miRNA gene	Chr6:28645563-28645660 (+)
A/J	MGP_AJ_G0008876	miRNA gene	Chr6:27416749-27416846 (+)
AKR/J	MGP_AKRJ_G0008866	miRNA gene	Chr6:28329347-28329444 (+)
BALB/cJ	MGP_BALBcJ_G0008864	miRNA gene	Chr6:27562167-27562264 (+)
C3H/HeJ	MGP_C3HHeJ_G0008803	miRNA gene	Chr6:28321508-28321605 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009093	miRNA gene	Chr6:29470716-29470813 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008014	miRNA gene	Chr6:25604749-25604846 (+)
CAST/EiJ	MGP_CASTEiJ_G0008646	miRNA gene	Chr6:28143440-28143537 (+)
CBA/J	MGP_CBAJ_G0008770	miRNA gene	Chr6:30581570-30581667 (+)
DBA/2J	MGP_DBA2J_G0008802	miRNA gene	Chr6:27347625-27347722 (+)
FVB/NJ	MGP_FVBNJ_G0008820	miRNA gene	Chr6:27111235-27111332 (+)
LP/J	MGP_LPJ_G0008895	miRNA gene	Chr6:28779686-28779783 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008786	miRNA gene	Chr6:33010464-33010561 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009070	miRNA gene	Chr6:28202981-28203078 (+)
PWK/PhJ	MGP_PWKPhJ_G0008573	miRNA gene	Chr6:26921082-26921179 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008418	miRNA gene	Chr6:27954311-27954408 (+)
WSB/EiJ	MGP_WSBEiJ_G0008742	miRNA gene	Chr6:28173816-28173913 (+)

Human Ortholog

MIR335, microRNA 335

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

MIR335, microRNA 335
Synonyms

hsa-mir-335, mir-335, MIRN335, miRNA335
Links

HGNC:31773

NCBI Gene ID: 442904
Chr Location

chr7:130496111-130496204 (+) GRCh38

MGI Vertebrate Homology

Mir335 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: MIR335
Gene Tree

Mir335

less

Phenotype Summary

3 phenotype references

All Mutations and Alleles

4
Endonuclease-mediated

1
Targeted

3
Find Mice (IMSR)

1 strains or lines available

less

All GO Annotations

2
GO References

3

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

769
Tissues

35
Literature Summary

13

Images

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

less

All Sequences

23
RefSeq

1

Ensembl

ENSMUSG00000065501 (Evidence)
NCBI Gene

723930

Representative Sequences				Length	Strain/Species	Flank
	genomic	723930	NCBI Gene Model \| MGI Sequence Detail	98	C57BL/6J	± kb
	transcript	NR_029900	RefSeq \| MGI Sequence Detail	98	C57BL/6

less

All nucleic 12

Primer pair 7

Other 5

less

miRBase

MI0000817

Summaries

All 31

Developmental Gene Expression 13

Gene Ontology 3

Phenotypes 3
Earliest

J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
Latest

J:338912 Jones BT, et al., Target-directed microRNA degradation regulates developmental microRNA expression and embryonic growth in mammals. Genes Dev. 2023 Aug 8;

TSS for Mir335:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55396	Chr6:30740714-30740755 (+)	-563 bp
Tssr55397	Chr6:30741373-30741377 (+)	77 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23