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BC048562 Gene Detail
Summary
  • Symbol
    BC048562
  • Name
    cDNA sequence BC048562
  • Feature Type
    protein coding gene
  • IDs
    MGI:3618861
    NCBI Gene: 434439
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:108436482-108446083 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 59.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3618861
protein coding gene Chr9:108436482-108446086 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035297
protein coding gene Chr9:110394186-110405207 (+)
A/J MGP_AJ_G0035276
protein coding gene Chr9:106347208-106358596 (+)
AKR/J MGP_AKRJ_G0035208
protein coding gene Chr9:109003458-109014782 (+)
BALB/cJ MGP_BALBcJ_G0035270
protein coding gene Chr9:106046546-106055785 (+)
C3H/HeJ MGP_C3HHeJ_G0034980
protein coding gene Chr9:109397245-109406829 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035790
protein coding gene Chr9:113393307-113413684 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032688
protein coding gene Chr9:103778085-103787465 (+)
CAST/EiJ MGP_CASTEiJ_G0034291
protein coding gene Chr9:109371920-109383167 (+)
CBA/J MGP_CBAJ_G0034948
protein coding gene Chr9:117397459-117407463 (+)
DBA/2J MGP_DBA2J_G0035109
protein coding gene Chr9:105802886-105812739 (+)
FVB/NJ MGP_FVBNJ_G0035057
protein coding gene Chr9:104569297-104578952 (+)
LP/J MGP_LPJ_G0035185
protein coding gene Chr9:110589645-110600019 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035096
protein coding gene Chr9:118967123-118990448 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035811
protein coding gene Chr9:109292392-109302488 (+)
PWK/PhJ MGP_PWKPhJ_G0033998
protein coding gene Chr9:106132092-106141967 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033833
protein coding gene Chr9:109349019-109359986 (+)
WSB/EiJ MGP_WSBEiJ_G0034412
protein coding gene Chr9:109177709-109189682 (+)



Homology
more
  • Human Ortholog
    C3orf84, chromosome 3 open reading frame 84
  • Vertebrate Orthologs
    7
  • Human Ortholog
    C3orf84, chromosome 3 open reading frame 84
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 646498
    neXtProt AC: NX_H3BNL1
    UniProt: H3BNL1

  • Chr Location
    3p21.31; chr3:49177539-49192684 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Expression
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  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 434439 NCBI Gene Model | MGI Sequence Detail 9602 C57BL/6J ±  kb
transcript NM_001004192 RefSeq | MGI Sequence Detail 687 C57BL/6  
polypeptide NP_001004192 RefSeq | MGI Sequence Detail 204 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR029369 Domain of unknown function with conserved HDNR motif
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Phenotypes 5
  • Earliest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory