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Mir196b Gene Detail
Summary
  • Symbol
    Mir196b
  • Name
    microRNA 196b
  • Synonyms
    mir 196b, Mirn196b, mmu-mir-196b
  • Feature Type
    miRNA gene
  • IDs
    MGI:3618741
    NCBI Gene: 723820
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:52207061-52207145 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 25.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    9 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3618741
 miRNA gene Chr6:52207061-52207145 (-)
129S1/SvImJ MGP_129S1SvImJ_G0008904
 miRNA gene Chr6:51471257-51471341 (-)
A/J MGP_AJ_G0008889
 miRNA gene Chr6:49065916-49066000 (-)
AKR/J MGP_AKRJ_G0008879
 miRNA gene Chr6:50772337-50772421 (-)
BALB/cJ MGP_BALBcJ_G0008877
 miRNA gene Chr6:49426564-49426648 (-)
C3H/HeJ MGP_C3HHeJ_G0008816
 miRNA gene Chr6:50781370-50781454 (-)
C57BL/6NJ MGP_C57BL6NJ_G0009106
 miRNA gene Chr6:52607553-52607637 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0008026
 miRNA gene Chr6:46713758-46713842 (-)
CAST/EiJ MGP_CASTEiJ_G0008659
 miRNA gene Chr6:50596321-50596405 (-)
CBA/J MGP_CBAJ_G0008783
 miRNA gene Chr6:54806723-54806807 (-)
DBA/2J MGP_DBA2J_G0008815
 miRNA gene Chr6:48988338-48988422 (-)
FVB/NJ MGP_FVBNJ_G0008833
 miRNA gene Chr6:48599915-48599999 (-)
LP/J MGP_LPJ_G0008908
 miRNA gene Chr6:51449946-51450030 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0008798
 miRNA gene Chr6:57436372-57436456 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0009083
 miRNA gene Chr6:50701009-50701093 (-)
PWK/PhJ MGP_PWKPhJ_G0008586
 miRNA gene Chr6:48612318-48612402 (-)
SPRET/EiJ MGP_SPRETEiJ_G0008430
 miRNA gene Chr6:50036418-50036502 (-)
WSB/EiJ MGP_WSBEiJ_G0008755
 miRNA gene Chr6:50717172-50717256 (-)



Homology
more
  • Human Ortholog
    MIR196B, microRNA 196b
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR196B, microRNA 196b
  • Synonyms
    miR-196b, MIRN196B, miRNA196B
  • Links
    NCBI Gene ID: 442920

  • Chr Location
    chr7:27169480-27169563 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit anterior homeotic transformation with a rudimentary rib on the first lumbar vertebra and posterior displacement of the sacrum or anterior homeotic transformation of all sacral elements with posterior displacement of the sacrum.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    717
  • Tissues
    11
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      23
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 723820 NCBI Gene Model | MGI Sequence Detail 85 C57BL/6J ±  kb
    transcript NR_029912 RefSeq | MGI Sequence Detail 85 C57BL/6  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 3
      Primer pair 1
      Other 2
    Other Database
    Links
    less
    miRBase MI0001151
    References
    more
    • Summaries
      All 26
      Developmental Gene Expression 6
      Gene Ontology 1
      Phenotypes 11
    • Earliest
      J:90106 Yekta S, et al., MicroRNA-directed cleavage of HOXB8 mRNA. Science. 2004 Apr 23;304(5670):594-6
    • Latest
      J:317804 Hauswirth GM, et al., Breaking constraint of mammalian axial formulae. Nat Commun. 2022 Jan 11;13(1):243
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory