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Cypt1 Gene Detail
Summary
  • Symbol
    Cypt1
  • Name
    cysteine-rich perinuclear theca 1
  • Synonyms
    4931420D14Rik, Ckt1r3, CYPT1, Cypt5, Cypt6, TISP55
  • Feature Type
    protein coding gene
  • IDs
    MGI:3616441
    NCBI Gene: 66742
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:16389108-16389928 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 11.68 cM, cytoband A1.3
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    5 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3616441
 protein coding gene ChrX:16389108-16389930 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035577
 protein coding gene ChrX:11388494-11389314 (+)
A/J MGP_AJ_G0035554
 protein coding gene ChrX:11478158-11478978 (+)
AKR/J MGP_AKRJ_G0035486
 protein coding gene ChrX:11824064-11824884 (+)
BALB/cJ MGP_BALBcJ_G0035547
 protein coding gene ChrX:11278923-11279743 (+)
C3H/HeJ MGP_C3HHeJ_G0035264
 protein coding gene ChrX:11514621-11515441 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036082
 protein coding gene ChrX:11658217-11659037 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032947
 protein coding gene ChrX:10034838-10035679 (+)
CAST/EiJ MGP_CASTEiJ_G0034556
 protein coding gene ChrX:11057061-11057881 (+)
CBA/J MGP_CBAJ_G0035233
 protein coding gene ChrX:12201628-12202448 (+)
DBA/2J MGP_DBA2J_G0035385
 protein coding gene ChrX:11325695-11326515 (+)
FVB/NJ MGP_FVBNJ_G0035332
 protein coding gene ChrX:11178326-11179146 (+)
LP/J MGP_LPJ_G0035467
 protein coding gene ChrX:11664945-11665765 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035376
 protein coding gene ChrX:12285142-12285962 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036089
 protein coding gene ChrX:11312268-11313088 (+)
PWK/PhJ MGP_PWKPhJ_G0034257
 protein coding gene ChrX:10648189-10649009 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034681
 protein coding gene ChrX:131391751-131392568 (+)
WSB/EiJ MGP_WSBEiJ_G0034691
 protein coding gene ChrX:11261151-11261971 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000023257 Ensembl Gene Model | MGI Sequence Detail 821 C57BL/6J ±  kb
transcript ENSMUST00000024026 Ensembl | MGI Sequence Detail 673 Not Applicable  
polypeptide ENSMUSP00000024026 Ensembl | MGI Sequence Detail 173 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
Other
Accession IDs
less
MGI:1913992, MGI:3616444
References
more
  • Summaries
    All 19
    Gene Ontology 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory