About   Help   FAQ
Due to maintenance, access to MGI may be intermittent 7:30-8:30 AM EDT Thursday, May 28.
Atg4a-ps Pseudogene Detail
Summary
  • Symbol
    Atg4a-ps
  • Name
    autophagy related 4A, pseudogene
Location &
Maps
more
  • Sequence Map
    Chr3:103643954-103646068 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 45.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3615624
pseudogene Chr3:103643953-103646068 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036141
protein coding gene ChrX:138625275-138632492 (+)
A/J MGP_AJ_G0027654
protein coding gene Chr3:101590598-101592154 (-)
AKR/J MGP_AKRJ_G0036044
protein coding gene ChrX:142431795-142437456 (+)
BALB/cJ MGP_BALBcJ_G0036109
protein coding gene ChrX:136290442-136297831 (+)
C3H/HeJ MGP_C3HHeJ_G0027396
protein coding gene Chr3:104429514-104438938 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028110
protein coding gene Chr3:108829071-108831703 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023174
protein coding gene Chr2:8089127-8091191 (-)
CAST/EiJ MGP_CASTEiJ_G0035109
protein coding gene ChrX:119455879-119461584 (+)
CBA/J MGP_CBAJ_G0027371
protein coding gene Chr3:112558657-112561051 (-)
DBA/2J MGP_DBA2J_G0035952
protein coding gene ChrX:137117925-137124451 (+)
FVB/NJ MGP_FVBNJ_G0035886
protein coding gene ChrX:136348370-136353694 (+)
LP/J MGP_LPJ_G0036043
protein coding gene ChrX:139561883-139568484 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027511
protein coding gene Chr3:118671646-118673093 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028165
protein coding gene Chr3:103621416-103625121 (-)
PWK/PhJ MGP_PWKPhJ_G0034802
protein coding gene ChrX:116331944-116337621 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034628
protein coding gene ChrX:119966437-119972012 (+)
WSB/EiJ MGP_WSBEiJ_G0026932
protein coding gene Chr3:104170568-104173682 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Atg4a-ps
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087119 Ensembl Gene Model | MGI Sequence Detail 2115 C57BL/6J ±  kb
transcript ENSMUST00000117271 Ensembl | MGI Sequence Detail 2115 Not Applicable  
polypeptide ENSMUSP00000143291 Ensembl | MGI Sequence Detail 396 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
References
more
  • Summaries
    All 12
    Diseases 1
    Phenotypes 5
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/19/2020
MGI 6.15
The Jackson Laboratory