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Atg4a-ps Pseudogene Detail
Summary
  • Symbol
    Atg4a-ps
  • Name
    autophagy related 4A, pseudogene
Location &
Maps
more
  • Sequence Map
    Chr3:103643954-103646068 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 45.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3615624
pseudogene Chr3:103643953-103646068 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036141
protein coding gene ChrX:138625275-138632492 (+)
A/J MGP_AJ_G0027654
protein coding gene Chr3:101590598-101592154 (-)
AKR/J MGP_AKRJ_G0036044
protein coding gene ChrX:142431795-142437456 (+)
BALB/cJ MGP_BALBcJ_G0036109
protein coding gene ChrX:136290442-136297831 (+)
C3H/HeJ MGP_C3HHeJ_G0027396
protein coding gene Chr3:104429514-104438938 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028110
protein coding gene Chr3:108829071-108831703 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023174
protein coding gene Chr2:8089127-8091191 (-)
CAST/EiJ MGP_CASTEiJ_G0035109
protein coding gene ChrX:119455879-119461584 (+)
CBA/J MGP_CBAJ_G0027371
protein coding gene Chr3:112558657-112561051 (-)
DBA/2J MGP_DBA2J_G0035952
protein coding gene ChrX:137117925-137124451 (+)
FVB/NJ MGP_FVBNJ_G0035886
protein coding gene ChrX:136348370-136353694 (+)
LP/J MGP_LPJ_G0036043
protein coding gene ChrX:139561883-139568484 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027511
protein coding gene Chr3:118671646-118673093 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028165
protein coding gene Chr3:103621416-103625121 (-)
PWK/PhJ MGP_PWKPhJ_G0034802
protein coding gene ChrX:116331944-116337621 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034628
protein coding gene ChrX:119966437-119972012 (+)
WSB/EiJ MGP_WSBEiJ_G0026932
protein coding gene Chr3:104170568-104173682 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Atg4a-ps
  • Find Mice (IMSR)
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087119 Ensembl Gene Model | MGI Sequence Detail 2115 C57BL/6J ±  kb
transcript ENSMUST00000117271 Ensembl | MGI Sequence Detail 2115 Not Applicable  
polypeptide ENSMUSP00000143291 Ensembl | MGI Sequence Detail 396 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
References
more
  • Summaries
    All 12
    Diseases 1
    Phenotypes 5
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory