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Hhla1 Gene Detail
Summary
  • Symbol
    Hhla1
  • Name
    HERV-H LTR-associating 1
  • Synonyms
    F930104E18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3615329
    NCBI Gene: 654498
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:65922443-65976804 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 29.16 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    413 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3615329
protein coding gene Chr15:65922443-65976804 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021902
protein coding gene Chr15:65430380-65477696 (-)
A/J MGP_AJ_G0021861
protein coding gene Chr15:62928221-62984270 (-)
AKR/J MGP_AKRJ_G0021843
protein coding gene Chr15:64687965-64741226 (-)
BALB/cJ MGP_BALBcJ_G0021868
protein coding gene Chr15:63114964-63168172 (-)
C3H/HeJ MGP_C3HHeJ_G0021641
protein coding gene Chr15:64802580-64855368 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022307
protein coding gene Chr15:67968225-68017602 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019844
protein coding gene Chr15:59744367-59785577 (-)
CAST/EiJ MGP_CASTEiJ_G0021160
protein coding gene Chr15:65446639-65486236 (-)
CBA/J MGP_CBAJ_G0021607
protein coding gene Chr15:70241814-70293962 (-)
DBA/2J MGP_DBA2J_G0021732
protein coding gene Chr15:62725397-62776445 (-)
FVB/NJ MGP_FVBNJ_G0021714
protein coding gene Chr15:61764996-61817872 (-)
LP/J MGP_LPJ_G0021804
protein coding gene Chr15:65309269-65355866 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021737
protein coding gene Chr15:75328894-75384678 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022329
protein coding gene Chr15:65057352-65113681 (-)
PWK/PhJ MGP_PWKPhJ_G0020901
protein coding gene Chr15:62811501-62855794 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020742
protein coding gene Chr15:64909050-64955053 (-)
WSB/EiJ MGP_WSBEiJ_G0021212
protein coding gene Chr15:65034944-65079948 (-)



Homology
more
  • Human Ortholog
    HHLA1, HERV-H LTR-associating 1
  • Vertebrate Orthologs
    5
  • Human Ortholog
    HHLA1, HERV-H LTR-associating 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PLA2L
  • Links
    NCBI Gene ID: 10086
    neXtProt AC: NX_C9JL84
    UniProt: C9JL84

  • Chr Location
    8q24.22; chr8:132061486-132105265 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    26 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 654498 NCBI Gene Model | MGI Sequence Detail 54362 C57BL/6J ±  kb
transcript NM_001145096 RefSeq | MGI Sequence Detail 2262 C57BL/6  
polypeptide Q3TYV2 UniProt | EBI | MGI Sequence Detail 514 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR037643 HERV-H LTR-associating protein 1
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 39
    Diseases 1
    Gene Ontology 1
    Phenotypes 26
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory