BC085271 Pseudogene Detail

Summary

• Symbol
  BC085271
• Name
  cDNA sequence BC085271

• Feature Type
  pseudogene
• IDs
  MGI:3612444
  NCBI Gene: 100504508
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:182987114-182987980 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3612444	pseudogene	Chr1:182986473-182988051 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039649	pseudogene	Chr1:189843717-189845225 (-)
A/J	MGP_AJ_G0039648	pseudogene	Chr1:182091510-182092263 (-)
AKR/J	MGP_AKRJ_G0039598	pseudogene	Chr16:12338333-12339109 (+)
BALB/cJ	MGP_BALBcJ_G0039621	pseudogene	Chr1:182735343-182736209 (-)
C3H/HeJ	MGP_C3HHeJ_G0039284	pseudogene	Chr1:188307748-188309122 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040201	pseudogene	Chr16:12689952-12690728 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039276	pseudogene	Chr16:13247977-13248753 (+)
DBA/2J	MGP_DBA2J_G0039470	pseudogene	Chr16:11804712-11805488 (+)
FVB/NJ	MGP_FVBNJ_G0039425	pseudogene	Chr16:11852958-11853734 (+)
LP/J	MGP_LPJ_G0039511	pseudogene	Chr16:12330080-12330855 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039404	pseudogene	Chr1:210201800-210203174 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040305	pseudogene	Chr16:12283329-12284105 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  BC085271
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000102478 (Evidence)
• NCBI Gene
  100504508

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102478	Ensembl Gene Model | MGI Sequence Detail	867	C57BL/6J
transcript	ENSMUST00000195236	Ensembl | MGI Sequence Detail	867	Not Applicable
polypeptide	Q5U445	UniProt | EBI | MGI Sequence Detail	289	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR037231 NAP-like superfamily
  IPR002164 Nucleosome assembly protein (NAP)

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;