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Ly6a2 Pseudogene Detail
Summary
  • Symbol
    Ly6a2
  • Name
    lymphocyte antigen 6 complex, locus A2
  • Synonyms
    I830127L07Rik
Location &
Maps
more
  • Sequence Map
    Chr15:75003226-75006977 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 34.29 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    83 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3612406
pseudogene Chr15:75003141-75006977 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0039800
pseudogene Chr15:72512695-72516465 (+)
AKR/J MGP_AKRJ_G0039727
pseudogene Chr15:74413534-74417185 (+)
BALB/cJ MGP_BALBcJ_G0039774
pseudogene Chr15:72472423-72476080 (+)
C3H/HeJ MGP_C3HHeJ_G0039429
pseudogene Chr15:74509147-74512301 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040338
pseudogene Chr15:77876903-77880654 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0039399
pseudogene Chr15:80543295-80546955 (+)
DBA/2J MGP_DBA2J_G0039600
pseudogene Chr15:72069008-72072719 (+)
FVB/NJ MGP_FVBNJ_G0039556
pseudogene Chr15:71081399-71085071 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0039556
pseudogene Chr15:85839022-85842870 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0040440
pseudogene Chr15:74355749-74907340 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    3
  • Radiation induced
    2
  • Genomic Mutations
    5 involving Ly6a2
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000102051 Ensembl Gene Model | MGI Sequence Detail 3752 C57BL/6J ±  kb
transcript ENSMUST00000187250 Ensembl | MGI Sequence Detail 730 Not Applicable  
polypeptide NP_001365169 RefSeq | MGI Sequence Detail 134 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR018363 CD59 antigen, conserved site
    IPR016054 Ly-6 antigen/uPA receptor-like
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 32
    Diseases 1
    Phenotypes 23
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/18/2022
MGI 6.17
The Jackson Laboratory