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Ccdc36 Gene Detail
Summary
  • Symbol
    Ccdc36
  • Name
    coiled-coil domain containing 36
  • Feature Type
    protein coding gene
  • IDs
    MGI:3612242
    NCBI Gene: 434438
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr9:108403611-108428484 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 59.32 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    19 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3612242
protein coding gene Chr9:108403502-108431841 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035296
protein coding gene Chr9:110358584-110386190 (-)
A/J MGP_AJ_G0035275
protein coding gene Chr9:106314283-106339214 (-)
AKR/J MGP_AKRJ_G0035207
protein coding gene Chr9:108970680-108995467 (-)
BALB/cJ MGP_BALBcJ_G0035269
protein coding gene Chr9:106010612-106038550 (-)
C3H/HeJ MGP_C3HHeJ_G0034979
protein coding gene Chr9:109363690-109389251 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035789
protein coding gene Chr9:113360101-113385309 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032687
protein coding gene Chr9:103746536-103770813 (-)
CAST/EiJ MGP_CASTEiJ_G0034290
protein coding gene Chr9:109334480-109362054 (-)
CBA/J MGP_CBAJ_G0034947
protein coding gene Chr9:117360128-117386146 (-)
DBA/2J MGP_DBA2J_G0035108
protein coding gene Chr9:105769868-105794921 (-)
FVB/NJ MGP_FVBNJ_G0035056
protein coding gene Chr9:104536510-104561303 (-)
LP/J MGP_LPJ_G0035184
protein coding gene Chr9:110555397-110581650 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035095
protein coding gene Chr9:118934167-118959129 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035810
protein coding gene Chr9:109258420-109284398 (-)
PWK/PhJ MGP_PWKPhJ_G0033997
protein coding gene Chr9:106098078-106123804 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033832
protein coding gene Chr9:109311271-109340475 (-)
WSB/EiJ MGP_WSBEiJ_G0034411
protein coding gene Chr9:109139036-109166364 (-)



Homology
more
  • Human Ortholog
    CCDC36, coiled-coil domain containing 36
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCDC36, coiled-coil domain containing 36
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CT74
  • Links
    NCBI Gene ID: 339834
    neXtProt AC: NX_Q8IYA8
    UniProt: Q8IYA8

  • Chr Location
    3p21.31; chr3:49198428-49258104 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047220 Ensembl Gene Model | MGI Sequence Detail 24874 C57BL/6J ±  kb
transcript ENSMUST00000076592 Ensembl | MGI Sequence Detail 2890 Not Applicable  
polypeptide ENSMUSP00000075898 Ensembl | MGI Sequence Detail 574 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
  • Latest
    J:238496 Stanzione M, et al., Meiotic DNA break formation requires the unsynapsed chromosome axis-binding protein IHO1 (CCDC36) in mice. Nat Cell Biol. 2016 Nov;18(11):1208-1220

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
01/15/2019
MGI 6.13
The Jackson Laboratory