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Efcc1 Gene Detail
Summary
  • Symbol
    Efcc1
  • Name
    EF hand and coiled-coil domain containing 1
  • Synonyms
    AB041550, Ccdc48
  • Feature Type
    protein coding gene
  • IDs
    MGI:3611451
    NCBI Gene: 58229
  • Gene Overview
    MyGene.info: EFCC1
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:87730869-87755908 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 39.02 cM, cytoband D2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    151 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3611451
protein coding gene Chr6:87730820-87762423 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030996
protein coding gene Chr6:89091968-89117823 (+)
A/J MGP_AJ_G0030962
protein coding gene Chr6:85652235-85677467 (+)
AKR/J MGP_AKRJ_G0030893
protein coding gene Chr6:88130792-88157557 (+)
BALB/cJ MGP_BALBcJ_G0030975
protein coding gene Chr6:85649998-85677105 (+)
C3H/HeJ MGP_C3HHeJ_G0030735
protein coding gene Chr6:96316924-96342060 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031432
protein coding gene Chr6:91476281-91509112 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028616
protein coding gene Chr6:83828935-83832081 (+)
CAST/EiJ MGP_CASTEiJ_G0030084
protein coding gene Chr6:88215945-88241049 (+)
CBA/J MGP_CBAJ_G0030659
protein coding gene Chr6:95021366-95049116 (+)
DBA/2J MGP_DBA2J_G0030815
protein coding gene Chr6:84953849-84978860 (+)
FVB/NJ MGP_FVBNJ_G0030768
protein coding gene Chr6:84139980-84165420 (+)
LP/J MGP_LPJ_G0030892
protein coding gene Chr6:89110892-89137427 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030801
protein coding gene Chr6:99157842-99182882 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031459
protein coding gene Chr6:87979748-88010844 (+)
PWK/PhJ MGP_PWKPhJ_G0029799
protein coding gene Chr6:83922249-83948257 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029627
protein coding gene Chr6:86799441-86827467 (+)
WSB/EiJ MGP_WSBEiJ_G0030165
protein coding gene Chr6:88437827-88463225 (+)



Homology
more
  • Human Ortholog
    EFCC1, EF-hand and coiled-coil domain containing 1
  • Vertebrate Orthologs
    6
  • Human Ortholog
    EFCC1, EF-hand and coiled-coil domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C3orf73, CCDC48
  • Links
    NCBI Gene ID: 79825
    neXtProt AC: NX_Q9HA90
    UniProt: Q9HA90

  • Chr Location
    3q21.3; chr3:129001604-129040742 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000068263 Ensembl Gene Model | MGI Sequence Detail 25040 C57BL/6J ±  kb
transcript ENSMUST00000032132 Ensembl | MGI Sequence Detail 2729 Not Applicable  
polypeptide ENSMUSP00000032132 Ensembl | MGI Sequence Detail 559 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR031601 Coiled-coil domain-containing protein 48
    IPR002048 EF-hand domain
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 4
Other
Accession IDs
less
MGI:1931020
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory