5730409E04Rik Gene Detail

Summary

• Symbol
  5730409E04Rik
• Name
  RIKEN cDNA 5730409E04Rik gene
• Synonyms
  7530403E16Rik

• Feature Type
  protein coding gene
• IDs
  MGI:3609248
  NCBI Gene: 230757
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:126503638-126508164 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 60.90 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  285 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3609248	protein coding gene	Chr4:126503611-126508164 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0028784	protein coding gene	Chr4:128311642-128316073 (+)
A/J	MGP_AJ_G0028743	protein coding gene	Chr4:123256799-123261236 (+)
AKR/J	MGP_AKRJ_G0028696	protein coding gene	Chr4:126641158-126646006 (+)
BALB/cJ	MGP_BALBcJ_G0028766	protein coding gene	Chr4:123826528-123833646 (+)
C3H/HeJ	MGP_C3HHeJ_G0028480	protein coding gene	Chr4:126711697-126716112 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0029208	protein coding gene	Chr4:133199151-133203577 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026481	protein coding gene	Chr4:116383446-116388165 (+)
CAST/EiJ	MGP_CASTEiJ_G0027913	protein coding gene	Chr4:124821427-124825857 (+)
CBA/J	MGP_CBAJ_G0028446	protein coding gene	Chr4:136414135-136419157 (+)
DBA/2J	MGP_DBA2J_G0028595	protein coding gene	Chr4:123701612-123706443 (+)
FVB/NJ	MGP_FVBNJ_G0028562	protein coding gene	Chr4:122357376-122362308 (+)
LP/J	MGP_LPJ_G0028696	protein coding gene	Chr4:128588449-128594670 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028588	protein coding gene	Chr4:141438760-141443469 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029246	protein coding gene	Chr4:127001435-127007509 (+)
PWK/PhJ	MGP_PWKPhJ_G0027634	protein coding gene	Chr4:120196130-120201351 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0027460	protein coding gene	Chr4:122832302-122838012 (+)
WSB/EiJ	MGP_WSBEiJ_G0027993	protein coding gene	Chr4:127114098-127120092 (+)

Homology

• Human Ortholog
  C1orf216, chromosome 1 open reading frame 216

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C1orf216, chromosome 1 open reading frame 216
  
• Links
  HGNC:26800

  NCBI Gene ID: 127703

  UniProt: Q8TAB5

  
  
• Chr Location
  1p34.3; chr1:35713877-35718894 (-)  GRCh38

---

• MGI Vertebrate Homology
  5730409E04Rik stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: C1orf216
• Gene Tree
  5730409E04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 5730409E04Rik
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  733
• Tissues
  4
• cDNA Data
  19
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS18656.1

• Ensembl
  ENSMUSG00000073755 (Evidence)
• NCBI Gene
  230757

Representative Sequences			Length	Strain/Species
genomic	230757	NCBI Gene Model | MGI Sequence Detail	4527	C57BL/6J
transcript	NM_001145950	RefSeq | MGI Sequence Detail	2864	C57BL/6
polypeptide	Q8BP99	UniProt | EBI | MGI Sequence Detail	230	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000059968 UPF0500 protein C1orf216
  (term hierarchy)
• InterPro Domains
  IPR027812 Protein of unknown function DUF4653

Molecular
Reagents

• All nucleic 19

  cDNA 19

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2140382

References

• Summaries
  All 25

  Developmental Gene Expression 1

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 5730409E04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39007	Chr4:126503612-126503689 (+)	13 bp
Tssr39008	Chr4:126503692-126503704 (+)	60 bp
Tssr39009	Chr4:126503727-126503734 (+)	93 bp
Tssr39010	Chr4:126503738-126503745 (+)	104 bp
Tssr39011	Chr4:126506830-126506865 (+)	3,210 bp