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Spata21 Gene Detail
Summary
  • Symbol
    Spata21
  • Name
    spermatogenesis associated 21
  • Feature Type
    protein coding gene
  • IDs
    MGI:3607787
    NCBI Gene: 329972
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:140815644-140840071 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 73.36 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    227 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3607787
protein coding gene Chr4:140815631-140840071 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029038
protein coding gene Chr4:144098308-144129560 (+)
A/J MGP_AJ_G0028997
protein coding gene Chr4:137850257-137874545 (+)
AKR/J MGP_AKRJ_G0028949
protein coding gene Chr4:141819060-141846152 (+)
BALB/cJ MGP_BALBcJ_G0029021
protein coding gene Chr4:138538131-138563787 (+)
C3H/HeJ MGP_C3HHeJ_G0028735
protein coding gene Chr4:142206372-142230556 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029462
protein coding gene Chr4:149146839-149175316 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026733
protein coding gene Chr4:130766467-130792051 (+)
CAST/EiJ MGP_CASTEiJ_G0028167
protein coding gene Chr4:140458745-140484753 (+)
CBA/J MGP_CBAJ_G0028699
protein coding gene Chr4:153442747-153473056 (+)
DBA/2J MGP_DBA2J_G0028849
protein coding gene Chr4:138245175-138269966 (+)
FVB/NJ MGP_FVBNJ_G0028816
protein coding gene Chr4:137352125-137374906 (+)
LP/J MGP_LPJ_G0028948
protein coding gene Chr4:144119392-144151910 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028842
protein coding gene Chr4:157295633-157327413 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029500
protein coding gene Chr4:142347428-142380475 (+)
PWK/PhJ MGP_PWKPhJ_G0027888
protein coding gene Chr4:135128669-135157411 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027713
protein coding gene Chr4:138174803-138199443 (+)
WSB/EiJ MGP_WSBEiJ_G0028245
protein coding gene Chr4:142632324-142662255 (+)



Homology
more
  • Human Ortholog
    SPATA21, spermatogenesis associated 21
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPATA21, spermatogenesis associated 21
  • Synonyms
    spergen2, spergen-2
  • Links
    NCBI Gene ID: 374955
    neXtProt AC: NX_Q7Z572
    UniProt: Q7Z572

  • Chr Location
    1p36.13; chr1:16397271-16437842 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Gene trapped
    1
  • Targeted
    1
  • Genomic Mutations
    3 involving Spata21
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045004 Ensembl Gene Model | MGI Sequence Detail 24428 C57BL/6J ±  kb
transcript ENSMUST00000051907 Ensembl | MGI Sequence Detail 2526 Not Applicable  
polypeptide ENSMUSP00000053080 Ensembl | MGI Sequence Detail 681 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    Genomic 1
    cDNA 12

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Gene Ontology 2
    Phenotypes 5
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/12/2021
MGI 6.17
The Jackson Laboratory