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Ssc5d Gene Detail
Summary
  • Symbol
    Ssc5d
  • Name
    scavenger receptor cysteine rich family, 5 domains
  • Synonyms
    A430110N23Rik, s5d-srcrb
  • Feature Type
    protein coding gene
  • IDs
    MGI:3606211
    NCBI Gene: 269855
Location & Maps
more
  • Genetic Map
    Chromosome 7, 2.85 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SSC5D, scavenger receptor cysteine rich family member with 5 domains
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SSC5D, scavenger receptor cysteine rich family member with 5 domains
    Orthology source: HomoloGene, HGNC
  • Synonyms
    S5D-SRCRB
  • Links
    NCBI Gene ID: 284297
    neXtProt AC: NX_A1L4H1

  • Chr Location
    19q13.42; chr19:55488497-55519099 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotype references
  • All Mutations and Alleles
    1
  • Gene trapped
    1
  • Incidental Mutations
    APF , CvDC
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000058585 VEGA Gene Model | MGI Sequence Detail 19042 C57BL/6J ±  kb
transcript OTTMUST00000143864 VEGA | MGI Sequence Detail 4348 Not Applicable  
polypeptide OTTMUSP00000074994 VEGA | MGI Sequence Detail 1371 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    139 from dbSNP Build 142
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000031635 soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
  • InterPro Domains
    IPR001190 SRCR domain
    IPR017448 SRCR-like domain
Molecular
Reagents
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  • All nucleic 18
    cDNA 16
    Primer pair 2

    Microarray probesets 1
References
more
  • Summaries
    All 19
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:169177 Miro-Julia C, et al., Molecular and functional characterization of mouse S5D-SRCRB: a new group B member of the scavenger receptor cysteine-rich superfamily. J Immunol. 2011 Feb 15;186(4):2344-54

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory