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Cimip2a Gene Detail
Summary
  • Symbol
    Cimip2a
  • Name
    ciliary microtubule inner protein 2A
  • Synonyms
    Fam166a
  • Feature Type
    protein coding gene
  • IDs
    MGI:3605773
    NCBI Gene: 68222
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:25108757-25112292 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 17.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    112 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3605773
 protein coding gene Chr2:25104382-25112293 (+)
129S1/SvImJ ENSMUSG00200049406
 protein coding gene Chr2:22092890-22096425 (+)
A/J ENSMUSG00195048575
 protein coding gene Chr2:22183631-22187166 (+)
AKR/J ENSMUSG00220053268
 protein coding gene Chr2:22301461-22304996 (+)
BALB/cJ ENSMUSG00180051653
 protein coding gene Chr2:22194546-22198081 (+)
C3H/HeJ ENSMUSG00175048038
 protein coding gene Chr2:22158720-22162255 (+)
C57BL/6NJ ENSMUSG00215046874
 protein coding gene Chr2:22217417-22220952 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023253
 protein coding gene Chr2:21115913-21119628 (+)
CAST/EiJ ENSTCUG00005050950
 protein coding gene Chr2:21935981-21939512 (+)
CBA/J ENSMUSG00210015553
 protein coding gene Chr2:22197699-22201234 (+)
DBA/2J ENSMUSG00185052764
 protein coding gene Chr2:22097892-22101427 (+)
FVB/NJ ENSMUSG00205046170
 protein coding gene Chr2:21951515-21955050 (+)
JF1/MsJ ENSUMUG00000055521
 protein coding gene Chr2:22011204-22014741 (+)
LP/J ENSMUSG00230038222
 protein coding gene Chr2:24028891-24032426 (+)
NOD/ShiLtJ ENSMUSG00190033159
 protein coding gene Chr2:22188732-22192267 (+)
NZO/HlLtJ ENSMUSG00225010297
 protein coding gene Chr2:31779552-31783087 (+)
PWK/PhJ ENSLUMG00010042458
 protein coding gene Chr2:22109160-22112697 (+)
SPRET/EiJ ENSMSPG00010029938
 protein coding gene Chr2:22796187-22799716 (+)
WSB/EiJ ENSIUOG00005051884
 protein coding gene Chr2:22056037-22059572 (+)



Homology
more
  • Human Ortholog
    CIMIP2A, ciliary microtubule inner protein 2A
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CIMIP2A, ciliary microtubule inner protein 2A
  • Synonyms
    FAM166A, HSD46
  • Links
    NCBI Gene ID: 401565
    UniProt: Q6J272

  • Chr Location
    9q34.3; chr9:137243584-137255122 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026969 Ensembl Gene Model | MGI Sequence Detail 3536 C57BL/6J ±  kb
transcript ENSMUST00000028346 Ensembl | MGI Sequence Detail 1125 Not Applicable  
polypeptide ENSMUSP00000028346 Ensembl | MGI Sequence Detail 319 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
Other
Accession IDs
less
MGI:7470735
References
more
  • Summaries
    All 24
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory