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BC049715 Gene Detail
Summary
  • Symbol
    BC049715
  • Name
    cDNA sequence BC049715
  • Feature Type
    protein coding gene
  • IDs
    MGI:3605234
    NCBI Gene: 320135
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:136804624-136817660 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 66.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    288 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3605234
protein coding gene Chr6:136804624-136818918 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031427
protein coding gene Chr6:141289783-141323076 (+)
A/J MGP_AJ_G0031403
protein coding gene Chr6:135679913-135733223 (+)
AKR/J MGP_AKRJ_G0031331
protein coding gene Chr6:139820358-139866092 (+)
BALB/cJ MGP_BALBcJ_G0031410
protein coding gene Chr6:135562405-135599384 (+)
C3H/HeJ MGP_C3HHeJ_G0031131
protein coding gene Chr6:139857048-139894865 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031871
protein coding gene Chr6:145169313-145182270 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029001
protein coding gene Chr6:134835391-134848522 (+)
CAST/EiJ MGP_CASTEiJ_G0030500
protein coding gene Chr6:139368167-139394550 (+)
CBA/J MGP_CBAJ_G0031091
protein coding gene Chr6:150559958-150619520 (+)
DBA/2J MGP_DBA2J_G0031248
protein coding gene Chr6:134572471-134608932 (+)
FVB/NJ MGP_FVBNJ_G0031199
protein coding gene Chr6:133475242-133509024 (+)
LP/J MGP_LPJ_G0031332
protein coding gene Chr6:141411572-141445990 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031239
protein coding gene Chr6:154452283-154503534 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031903
protein coding gene Chr6:139577053-139609252 (+)
PWK/PhJ MGP_PWKPhJ_G0030226
protein coding gene Chr6:133082098-133104604 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030050
protein coding gene Chr6:137848586-137873048 (+)
WSB/EiJ MGP_WSBEiJ_G0030592
protein coding gene Chr6:140219328-140243408 (+)



Homology
more
  • Human Ortholog
    C12orf60, chromosome 12 open reading frame 60
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C12orf60, chromosome 12 open reading frame 60
  • Links
    NCBI Gene ID: 144608
    neXtProt AC: NX_Q5U649
    UniProt: Q5U649

  • Chr Location
    12p13.1-p12.3; chr12:14567991-14823858 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000047515 Ensembl Gene Model | MGI Sequence Detail 13037 C57BL/6J ±  kb
    transcript ENSMUST00000203499 Ensembl | MGI Sequence Detail 2057 Not Applicable  
    polypeptide ENSMUSP00000145015 Ensembl | MGI Sequence Detail 247 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR027895 Protein of unknown function DUF4533
    Molecular
    Reagents
    less
    • All nucleic 13
      cDNA 13

      Microarray probesets 1
    References
    more
    • Summaries
      All 18
      Phenotypes 6
    • Earliest
      J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.
    last database update
    11/23/2021
    MGI 6.17
    The Jackson Laboratory