D030055H07Rik Gene Detail

Summary

• Symbol
  D030055H07Rik
• Name
  RIKEN cDNA D030055H07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3605036
  NCBI Gene: 654798
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:106025886-106037400 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 57.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3605036	lncRNA gene	Chr9:106025165-106037898 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004678	antisense lncRNA gene	Chr9:107926385-107939483 (+)
A/J	MGP_AJ_G0004659	antisense lncRNA gene	Chr9:104042939-104054373 (+)
AKR/J	MGP_AKRJ_G0004642	antisense lncRNA gene	Chr9:106630723-106642175 (+)
BALB/cJ	MGP_BALBcJ_G0004643	antisense lncRNA gene	Chr9:103724281-103735606 (+)
C3H/HeJ	MGP_C3HHeJ_G0004592	antisense lncRNA gene	Chr9:107038466-107051321 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004793	antisense lncRNA gene	Chr9:110891277-110902682 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004237	antisense lncRNA gene	Chr9:101538119-101549671 (+)
CAST/EiJ	MGP_CASTEiJ_G0004548	antisense lncRNA gene	Chr9:106925867-106937321 (+)
CBA/J	MGP_CBAJ_G0004586	antisense lncRNA gene	Chr9:114781885-114793330 (+)
DBA/2J	MGP_DBA2J_G0004601	antisense lncRNA gene	Chr9:103502020-103513364 (+)
FVB/NJ	MGP_FVBNJ_G0004619	antisense lncRNA gene	Chr9:102270356-102281686 (+)
LP/J	MGP_LPJ_G0004682	antisense lncRNA gene	Chr9:108150121-108162389 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004606	antisense lncRNA gene	Chr9:116444030-116455544 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004792	antisense lncRNA gene	Chr9:106864030-106875513 (+)
PWK/PhJ	MGP_PWKPhJ_G0004501	antisense lncRNA gene	Chr9:103795515-103807253 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004438	antisense lncRNA gene	Chr9:106928535-106939868 (+)
WSB/EiJ	MGP_WSBEiJ_G0004591	antisense lncRNA gene	Chr9:106772155-106783460 (+)

Homology

• Gene Tree
  D030055H07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  22

• Ensembl
  ENSMUSG00000086296 (Evidence)
• NCBI Gene
  654798

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086296	Ensembl Gene Model | MGI Sequence Detail	11515	C57BL/6J
transcript	ENSMUST00000150953	Ensembl | MGI Sequence Detail	4325	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 11

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for D030055H07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86850	Chr9:106025141-106025154 (+)	-738 bp
Tssr86851	Chr9:106025166-106025182 (+)	-712 bp
Tssr86852	Chr9:106025507-106025531 (+)	-367 bp
Tssr86853	Chr9:106025891-106025911 (+)	15 bp
Tssr3003	Chr9:106037235-106037266 (+)	11,365 bp