4833422C13Rik Gene Detail

Summary

• Symbol
  4833422C13Rik
• Name
  RIKEN cDNA 4833422C13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3603826
  NCBI Gene: 373852
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:91849784-91889991 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 47.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  953 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603826	lncRNA gene	Chr13:91849784-91889993 (-)
129S1/SvImJ	ENSMUSG00200009602	lncRNA gene	Chr13:86342960-86383165 (-)
A/J	ENSMUSG00195023811	protein coding gene	Chr13:86871629-86891951 (-)
A/J	ENSMUSG00195024614	lncRNA gene	Chr13:86858812-86891915 (-)
AKR/J	ENSMUSG00220014061	lncRNA gene	Chr13:85354087-85387172 (-)
BALB/cJ	ENSMUSG00180016571	lncRNA gene	Chr13:87385232-87425469 (-)
C3H/HeJ	ENSMUSG00175022674	protein coding gene	Chr13:87579676-87600063 (-)
C3H/HeJ	ENSMUSG00175023623	lncRNA gene	Chr13:87566858-87600027 (-)
C57BL/6NJ	ENSMUSG00215003118	lncRNA gene	Chr13:87446480-87486676 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002836	antisense lncRNA gene	Chr13:85516964-85551904 (-)
CAST/EiJ	ENSTCUG00005009623	lncRNA gene	Chr13:86670628-86703858 (-)
CBA/J	ENSMUSG00210024229	protein coding gene	Chr13:86859485-86879868 (-)
CBA/J	ENSMUSG00210024422	lncRNA gene	Chr13:86846669-86879832 (-)
DBA/2J	ENSMUSG00185010273	lncRNA gene	Chr13:90532652-90565821 (-)
DBA/2J	ENSMUSG00185009944	protein coding gene	Chr13:90545470-90565857 (-)
FVB/NJ	ENSMUSG00205007665	protein coding gene	Chr13:86342601-86362998 (-)
FVB/NJ	ENSMUSG00205008964	lncRNA gene	Chr13:86329783-86362962 (-)
JF1/MsJ	ENSUMUG00000025279	lncRNA gene	Chr13:90265579-90298887 (-)
LP/J	ENSMUSG00230004772	lncRNA gene	Chr13:100550783-100583950 (-)
LP/J	ENSMUSG00230004126	protein coding gene	Chr13:100563599-100583986 (-)
NOD/ShiLtJ	ENSMUSG00190018115	protein coding gene	Chr13:87251906-87272216 (-)
NOD/ShiLtJ	ENSMUSG00190018637	lncRNA gene	Chr13:87239090-87272180 (-)
NZO/HlLtJ	ENSMUSG00225034491	lncRNA gene	Chr13:93081112-93114276 (-)
NZO/HlLtJ	ENSMUSG00225032527	protein coding gene	Chr13:93093928-93114312 (-)
PWK/PhJ	ENSLUMG00010011623	lncRNA gene	Chr13:86382773-86416059 (-)
SPRET/EiJ	ENSMSPG00010006715	lncRNA gene	Chr13:87571149-87606117 (-)
WSB/EiJ	ENSIUOG00005031267	lncRNA gene	Chr13:86257669-86290777 (-)

Homology

• Gene Tree
  4833422C13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4833422C13Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000074782 (Evidence)
• NCBI Gene
  373852

Representative Sequences			Length	Strain/Species
genomic	373852	NCBI Gene Model | MGI Sequence Detail	40208	C57BL/6J
transcript	NR_015501	RefSeq | MGI Sequence Detail	2828	C57BL/6
polypeptide	Q3TSH1	UniProt | EBI | MGI Sequence Detail	58	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for 4833422C13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123410	Chr13:91889985-91889999 (-)	-1 bp
Tssr123409	Chr13:91889865-91889885 (-)	116 bp