9930004E17Rik Gene Detail

Summary

• Symbol
  9930004E17Rik
• Name
  RIKEN cDNA 9930004E17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3603579
  NCBI Gene: 654819
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:26391102-26391664 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  5 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603579	lncRNA gene	Chr14:26391102-26391664 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003231	antisense lncRNA gene	Chr14:19652150-19652647 (+)
A/J	MGP_AJ_G0003207	antisense lncRNA gene	Chr14:18874105-18874602 (+)
AKR/J	MGP_AKRJ_G0003190	antisense lncRNA gene	Chr14:19908247-19908744 (+)
BALB/cJ	MGP_BALBcJ_G0003194	antisense lncRNA gene	Chr14:18990936-18991433 (+)
C3H/HeJ	MGP_C3HHeJ_G0003150	antisense lncRNA gene	Chr14:19772633-19773130 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003337	antisense lncRNA gene	Chr14:20473333-20473830 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002863	antisense lncRNA gene	Chr14:19034040-19034561 (+)
CAST/EiJ	MGP_CASTEiJ_G0003116	antisense lncRNA gene	Chr14:19380664-19381161 (+)
CBA/J	MGP_CBAJ_G0003147	antisense lncRNA gene	Chr14:21289891-21290388 (+)
DBA/2J	MGP_DBA2J_G0003152	antisense lncRNA gene	Chr14:18960425-18960922 (+)
FVB/NJ	MGP_FVBNJ_G0003170	antisense lncRNA gene	Chr14:18923320-18923817 (+)
LP/J	MGP_LPJ_G0003228	antisense lncRNA gene	Chr14:19918972-19919469 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003161	antisense lncRNA gene	Chr14:20619537-20620034 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003338	antisense lncRNA gene	Chr14:19678354-19678851 (+)
PWK/PhJ	MGP_PWKPhJ_G0003074	antisense lncRNA gene	Chr14:18334685-18335182 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003020	antisense lncRNA gene	Chr14:19150725-19151238 (+)
WSB/EiJ	MGP_WSBEiJ_G0003150	antisense lncRNA gene	Chr14:19715806-19716303 (+)

Homology

• Gene Tree
  9930004E17Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• UniProt
  3

• Ensembl
  ENSMUSG00000096052 (Evidence)
• NCBI Gene
  654819

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096052	Ensembl Gene Model | MGI Sequence Detail	563	C57BL/6J
transcript	ENSMUST00000180031	Ensembl | MGI Sequence Detail	563	Not Applicable
polypeptide	Q3UVX4	UniProt | EBI | MGI Sequence Detail	269	Not Applicable

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for 9930004E17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124704	Chr14:26391094-26391126 (+)	8 bp