Mccc1os Gene Detail

Summary

• Symbol
  Mccc1os
• Name
  methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand
• Synonyms
  A330050B17Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3590669
  NCBI Gene: 654424
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:36054062-36062977 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 17.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3590669	antisense lncRNA gene	Chr3:36053982-36079255 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003734	antisense lncRNA gene	Chr3:33757588-33782973 (+)
A/J	MGP_AJ_G0003715	antisense lncRNA gene	Chr3:33128287-33159811 (+)
AKR/J	MGP_AKRJ_G0003692	antisense lncRNA gene	Chr3:33728683-33762100 (+)
BALB/cJ	MGP_BALBcJ_G0003704	antisense lncRNA gene	Chr3:32888015-32914347 (+)
C3H/HeJ	MGP_C3HHeJ_G0003651	antisense lncRNA gene	Chr3:33801337-33829812 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003844	antisense lncRNA gene	Chr3:35392657-35419746 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003349	antisense lncRNA gene	Chr3:30855825-30879864 (+)
CAST/EiJ	MGP_CASTEiJ_G0003614	antisense lncRNA gene	Chr3:33638115-33665861 (+)
CBA/J	MGP_CBAJ_G0003647	antisense lncRNA gene	Chr3:36331815-36359959 (+)
DBA/2J	MGP_DBA2J_G0003656	antisense lncRNA gene	Chr3:32602563-32628221 (+)
FVB/NJ	MGP_FVBNJ_G0003677	antisense lncRNA gene	Chr3:32049236-32082527 (+)
LP/J	MGP_LPJ_G0003735	antisense lncRNA gene	Chr3:34531767-34559124 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003665	antisense lncRNA gene	Chr3:38788671-38815806 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003845	antisense lncRNA gene	Chr3:33575138-33610149 (+)
PWK/PhJ	MGP_PWKPhJ_G0003570	antisense lncRNA gene	Chr3:32249572-32275241 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003513	antisense lncRNA gene	Chr3:32955355-32980094 (+)
WSB/EiJ	MGP_WSBEiJ_G0003650	antisense lncRNA gene	Chr3:33605284-33633606 (+)

Homology

• Gene Tree
  Mccc1os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Mccc1os
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000086392 (Evidence)
• NCBI Gene
  654424

Representative Sequences			Length	Strain/Species
genomic	654424	NCBI Gene Model | MGI Sequence Detail	8916	C57BL/6J
transcript	NR_029456	RefSeq | MGI Sequence Detail	4451	C57BL/6
polypeptide	Q8BG57	UniProt | EBI | MGI Sequence Detail	156	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Mccc1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28858	Chr3:36054566-36054589 (+)	516 bp