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Clec4b2 Gene Detail
Summary
  • Symbol
    Clec4b2
  • Name
    C-type lectin domain family 4, member b2
  • Synonyms
    F830043G12Rik, mDCAR1
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588267
    NCBI Gene: 381809
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:123172893-123204671 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 58.25 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    150 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3588267
protein coding gene Chr6:123172868-123204671 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031241
protein coding gene Chr6:126314162-126351942 (+)
A/J MGP_AJ_G0031210
protein coding gene Chr6:121488710-121526964 (+)
AKR/J MGP_AKRJ_G0031140
protein coding gene Chr6:124871656-124905608 (+)
BALB/cJ MGP_BALBcJ_G0031220
protein coding gene Chr6:121215878-121252754 (+)
C3H/HeJ MGP_C3HHeJ_G0030939
protein coding gene Chr6:124818213-124861325 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031679
protein coding gene Chr6:129640145-129676423 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028835
protein coding gene Chr6:118065656-118096256 (+)
CAST/EiJ MGP_CASTEiJ_G0030328
protein coding gene Chr6:125083839-125110110 (+)
CBA/J MGP_CBAJ_G0030902
protein coding gene Chr6:134713382-134747764 (+)
DBA/2J MGP_DBA2J_G0031058
protein coding gene Chr6:120446787-120479144 (+)
FVB/NJ MGP_FVBNJ_G0031010
protein coding gene Chr6:119377992-119414286 (+)
LP/J MGP_LPJ_G0031139
protein coding gene Chr6:126484990-126526445 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031046
protein coding gene Chr6:138640106-138675416 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031708
protein coding gene Chr6:124756602-124793005 (+)
PWK/PhJ MGP_PWKPhJ_G0030042
protein coding gene Chr6:119270816-119301004 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029870
protein coding gene Chr6:122890502-122924898 (+)
WSB/EiJ MGP_WSBEiJ_G0030410
protein coding gene Chr6:125062803-125095094 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000067767 Ensembl Gene Model | MGI Sequence Detail 31779 C57BL/6J ±  kb
transcript ENSMUST00000088455 Ensembl | MGI Sequence Detail 1174 Not Applicable  
polypeptide ENSMUSP00000085802 Ensembl | MGI Sequence Detail 208 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR033989 CD209-like, C-type lectin-like domain
    IPR018378 C-type lectin, conserved site
    IPR016187 C-type lectin fold
    IPR001304 C-type lectin-like
    IPR016186 C-type lectin-like/link domain superfamily
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:93065 Flornes LM, et al., Identification of lectin-like receptors expressed by antigen presenting cells and neutrophils and their mapping to a novel gene complex. Immunogenetics. 2004 Oct;56(7):506-17
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/04/2019
MGI 6.14
The Jackson Laboratory