9630014M24Rik Gene Detail

Summary

• Symbol
  9630014M24Rik
• Name
  RIKEN cDNA 9630014M24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3588234
  NCBI Gene: 381155
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr18:38734534-38971060 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 20.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6732 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3588234	lncRNA gene	Chr18:38734534-38971060 (+)
129S1/SvImJ	ENSMUSG00200044507	lncRNA gene	Chr18:35732397-35920555 (+)
A/J	ENSMUSG00195037797	lncRNA gene	Chr18:35884993-36073020 (+)
AKR/J	ENSMUSG00220017313	lncRNA gene	Chr18:35853003-36041025 (+)
BALB/cJ	ENSMUSG00180022485	lncRNA gene	Chr18:36334598-36522615 (+)
C3H/HeJ	ENSMUSG00175041363	lncRNA gene	Chr18:35850361-36038120 (+)
C57BL/6NJ	ENSMUSG00215031342	lncRNA gene	Chr18:35604747-35792976 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024170	lncRNA gene	Chr18:35471757-35659430 (+)
CBA/J	ENSMUSG00210021952	lncRNA gene	Chr18:35876584-36064594 (+)
DBA/2J	ENSMUSG00185020955	lncRNA gene	Chr18:35811169-35999143 (+)
FVB/NJ	ENSMUSG00205036530	lncRNA gene	Chr18:35520586-35702468 (+)
JF1/MsJ	ENSUMUG00000048715	lncRNA gene	Chr18:35951174-36136630 (+)
LP/J	ENSMUSG00230049177	lncRNA gene	Chr18:37926481-38115526 (+)
NOD/ShiLtJ	ENSMUSG00190022841	lncRNA gene	Chr18:35598699-35786396 (+)
NZO/HlLtJ	ENSMUSG00225047213	lncRNA gene	Chr18:37833285-38021398 (+)
PWK/PhJ	ENSLUMG00010013327	lncRNA gene	Chr18:36098674-36284361 (+)
SPRET/EiJ	ENSMSPG00010022668	lncRNA gene	Chr18:36120251-36308122 (+)
WSB/EiJ	ENSIUOG00005008307	lncRNA gene	Chr18:35592813-35780942 (+)

Homology

• Gene Tree
  9630014M24Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  79 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• UniProt
  1

• Ensembl
  ENSMUSG00000118257 (Evidence)
• NCBI Gene
  381155

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118257	Ensembl Gene Model | MGI Sequence Detail	236527	C57BL/6J
transcript	ENSMUST00000145090	Ensembl | MGI Sequence Detail	3867	Not Applicable
polypeptide	Q3V3R3	UniProt | EBI | MGI Sequence Detail	148	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 9630014M24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150804	Chr18:38734551-38734578 (+)	31 bp
Tssr150805	Chr18:38734658-38734672 (+)	131 bp
Tssr150806	Chr18:38735292-38735313 (+)	769 bp
Tssr150807	Chr18:38764720-38764769 (+)	30,211 bp
Tssr150808	Chr18:38765497-38765515 (+)	30,972 bp
Tssr150809	Chr18:38770234-38770242 (+)	35,704 bp
Tssr150812	Chr18:38847567-38847586 (+)	113,043 bp