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Krt39 Gene Detail
Summary
  • Symbol
    Krt39
  • Name
    keratin 39
  • Synonyms
    4732494G06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588208
    NCBI Gene: 237934
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:99514114-99521338 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 62.92 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    73 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3588208
protein coding gene Chr11:99512960-99521338 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019095
protein coding gene Chr11:102182640-102189855 (-)
A/J MGP_AJ_G0019063
protein coding gene Chr11:97882566-97889939 (-)
AKR/J MGP_AKRJ_G0019033
protein coding gene Chr11:100923037-100930224 (-)
BALB/cJ MGP_BALBcJ_G0019037
protein coding gene Chr11:98394195-98401450 (-)
C3H/HeJ MGP_C3HHeJ_G0018850
protein coding gene Chr11:101068792-101076007 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019487
protein coding gene Chr11:105316942-105324164 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017120
protein coding gene Chr11:95443668-95450817 (-)
CAST/EiJ MGP_CASTEiJ_G0018405
protein coding gene Chr11:102066975-102075954 (-)
CBA/J MGP_CBAJ_G0018821
protein coding gene Chr11:109709457-109716680 (-)
DBA/2J MGP_DBA2J_G0018929
protein coding gene Chr11:97448211-97455432 (-)
FVB/NJ MGP_FVBNJ_G0018918
protein coding gene Chr11:96959385-96966612 (-)
LP/J MGP_LPJ_G0018999
protein coding gene Chr11:102649222-102656447 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018945
protein coding gene Chr11:109374413-109381636 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019528
protein coding gene Chr11:101285225-101292635 (-)
PWK/PhJ MGP_PWKPhJ_G0018176
protein coding gene Chr11:98524747-98532121 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017964
protein coding gene Chr11:101027456-101034630 (-)
WSB/EiJ MGP_WSBEiJ_G0018453
protein coding gene Chr11:101251378-101258595 (-)



Homology
more
  • Human Ortholog
    KRT39, keratin 39
  • Vertebrate Orthologs
    7
  • Human Ortholog
    KRT39, keratin 39
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CK-39, K39, KA35
  • Links
    NCBI Gene ID: 390792
    neXtProt AC: NX_Q6A163
    UniProt: Q6A163

  • Chr Location
    17q21.2; chr17:40958417-40966892 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000064165 Ensembl Gene Model | MGI Sequence Detail 7225 C57BL/6J ±  kb
transcript ENSMUST00000107445 Ensembl | MGI Sequence Detail 1633 Not Applicable  
polypeptide ENSMUSP00000103069 Ensembl | MGI Sequence Detail 482 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    Genomic 2
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
  • Latest
    J:230728 Kumar V, et al., A keratin scaffold regulates epidermal barrier formation, mitochondrial lipid composition, and activity. J Cell Biol. 2015 Dec 7;211(5):1057-75

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory