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Zcchc16 Gene Detail
Summary
  • Symbol
    Zcchc16
  • Name
    zinc finger, CCHC domain containing 16
  • Synonyms
    C230031A03Rik, Mar4
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588192
    NCBI Gene: 619287
Location & Maps
more
  • Sequence Map
    ChrX:144688907-145122411 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      433505 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome X, 65.85 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    ZCCHC16, zinc finger CCHC-type containing 16
  • Vertebrate Orthologs
    6
  • Human Ortholog
    ZCCHC16, zinc finger CCHC-type containing 16
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Mar4, Mart4
  • Links
    NCBI Gene ID: 340595
    neXtProt AC: NX_Q6ZR62

  • Chr Location
    Xq23; chrX:112083025-112457245 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    3
  • Targeted
    3
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018930 VEGA Gene Model | MGI Sequence Detail 433505 C57BL/6J ±  kb
transcript OTTMUST00000045501 VEGA | MGI Sequence Detail 3635 Not Applicable  
polypeptide OTTMUSP00000020455 VEGA | MGI Sequence Detail 304 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1150 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 4
    Primer pair 1

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:96508 Brandt J, et al., Transposable elements as a source of genetic innovation: expression and evolution of a family of retrotransposon-derived neogenes in mammals. Gene. 2005 Jan 17;345(1):101-11
  • Latest
    J:228903 Irie M, et al., Cognitive Function Related to the Sirh11/Zcchc16 Gene Acquired from an LTR Retrotransposon in Eutherians. PLoS Genet. 2015 Sep;11(9):e1005521

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory