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Trim80 Gene Detail
Summary
  • Symbol
    Trim80
  • Name
    tripartite motif-containing 80
  • Synonyms
    4933422H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588186
    NCBI Gene: 432613
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:115331371-115339094 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 80.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3588186
protein coding gene Chr11:115331371-115339096 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019387
protein coding gene Chr11:119462241-119469967 (+)
A/J MGP_AJ_G0019356
protein coding gene Chr11:114247924-114255920 (+)
AKR/J MGP_AKRJ_G0019326
protein coding gene Chr11:117655059-117662920 (+)
BALB/cJ MGP_BALBcJ_G0019330
protein coding gene Chr11:114661200-114668936 (+)
C3H/HeJ MGP_C3HHeJ_G0019136
protein coding gene Chr11:118006263-118013978 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019780
protein coding gene Chr11:123104117-123111843 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017403
protein coding gene Chr11:111287247-111295459 (+)
CAST/EiJ MGP_CASTEiJ_G0018691
protein coding gene Chr11:119319837-119327656 (+)
CBA/J MGP_CBAJ_G0019108
protein coding gene Chr11:127957625-127965346 (+)
DBA/2J MGP_DBA2J_G0019219
protein coding gene Chr11:113683524-113691362 (+)
FVB/NJ MGP_FVBNJ_G0019211
protein coding gene Chr11:113159081-113171237 (+)
LP/J MGP_LPJ_G0019289
protein coding gene Chr11:119848488-119856202 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019244
protein coding gene Chr11:127133190-127140908 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019818
protein coding gene Chr11:118311024-118318745 (+)
PWK/PhJ MGP_PWKPhJ_G0018455
protein coding gene Chr11:114966234-114974358 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018248
protein coding gene Chr11:118056617-118063462 (+)
WSB/EiJ MGP_WSBEiJ_G0018743
protein coding gene Chr11:118259759-118269330 (+)



Homology
more
  • Human Ortholog
    TRIM80P, tripartite motif containing 80, pseudogene
  • Vertebrate Orthologs
    37
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM80P, tripartite motif containing 80, pseudogene
  • Synonyms
    TRIM47LP
  • Links
    NCBI Gene ID: 106480328

  • Chr Location
    17q25.1; chr17:75074306-75079549 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 432613 NCBI Gene Model | MGI Sequence Detail 7724 C57BL/6J ±  kb
transcript NM_001033775 RefSeq | MGI Sequence Detail 1932 C57BL/6  
polypeptide NP_001028947 RefSeq | MGI Sequence Detail 624 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
References
more
  • Summaries
    All 18
    Phenotypes 3
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/09/2022
MGI 6.21
The Jackson Laboratory