About   Help   FAQ
Trim80 Gene Detail
Summary
  • Symbol
    Trim80
  • Name
    tripartite motif-containing 80
  • Synonyms
    4933422H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3588186
    NCBI Gene: 432613
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:115440545-115448268 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 80.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    42 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3588186
protein coding gene Chr11:115440545-115448270 (.)
129S1/SvImJ MGP_129S1SvImJ_G0019387
protein coding gene Chr11:119462241-119469967 (+)
A/J MGP_AJ_G0019356
protein coding gene Chr11:114247924-114255920 (+)
AKR/J MGP_AKRJ_G0019326
protein coding gene Chr11:117655059-117662920 (+)
BALB/cJ MGP_BALBcJ_G0019330
protein coding gene Chr11:114661200-114668936 (+)
C3H/HeJ MGP_C3HHeJ_G0019136
protein coding gene Chr11:118006263-118013978 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019780
protein coding gene Chr11:123104117-123111843 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017403
protein coding gene Chr11:111287247-111295459 (+)
CAST/EiJ MGP_CASTEiJ_G0018691
protein coding gene Chr11:119319837-119327656 (+)
CBA/J MGP_CBAJ_G0019108
protein coding gene Chr11:127957625-127965346 (+)
DBA/2J MGP_DBA2J_G0019219
protein coding gene Chr11:113683524-113691362 (+)
FVB/NJ MGP_FVBNJ_G0019211
protein coding gene Chr11:113159081-113171237 (+)
LP/J MGP_LPJ_G0019289
protein coding gene Chr11:119848488-119856202 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019244
protein coding gene Chr11:127133190-127140908 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019818
protein coding gene Chr11:118311024-118318745 (+)
PWK/PhJ MGP_PWKPhJ_G0018455
protein coding gene Chr11:114966234-114974358 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018248
protein coding gene Chr11:118056617-118063462 (+)
WSB/EiJ MGP_WSBEiJ_G0018743
protein coding gene Chr11:118259759-118269330 (+)



Homology
more
  • Human Ortholog
    TRIM80P, tripartite motif containing 80, pseudogene
  • Vertebrate Orthologs
    4
  • Human Ortholog
    TRIM80P, tripartite motif containing 80, pseudogene
    Orthology source: HGNC
  • Synonyms
    TRIM47LP
  • Links
    NCBI Gene ID: 106480328

  • Chr Location
    17q25.1; chr17:75074306-75079549 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 432613 NCBI Gene Model | MGI Sequence Detail 7724 C57BL/6J ±  kb
transcript NM_001033775 RefSeq | MGI Sequence Detail 1932 C57BL/6  
polypeptide NP_001028947 RefSeq | MGI Sequence Detail 624 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 4
References
more
  • Summaries
    All 18
    Phenotypes 3
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/13/2018
MGI 6.13
The Jackson Laboratory