Gm1965 Gene Detail

Summary

• Symbol
  Gm1965
• Name
  predicted gene 1965

• Feature Type
  lncRNA gene
• IDs
  MGI:3584270
  NCBI Gene: 434065
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:89117976-89124352 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 39.81 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3584270	lncRNA gene	Chr6:89117976-89129170 (+)
129S1/SvImJ	ENSMUSG00200045950	lncRNA gene	Chr6:86058211-86064609 (+)
A/J	ENSMUSG00195043074	lncRNA gene	Chr6:85767666-85774061 (+)
A/J	ENSMUSG00195037473	protein coding gene	Chr6:85767689-85773950 (+)
AKR/J	ENSMUSG00220036900	lncRNA gene	Chr6:84661304-84667698 (+)
AKR/J	ENSMUSG00220026323	protein coding gene	Chr6:84661327-84667587 (+)
BALB/cJ	ENSMUSG00180018085	lncRNA gene	Chr6:86140259-86146654 (+)
BALB/cJ	ENSMUSG00180015411	protein coding gene	Chr6:86140282-86146543 (+)
C3H/HeJ	ENSMUSG00175025530	lncRNA gene	Chr6:91257059-91263458 (-)
C57BL/6NJ	ENSMUSG00215019123	protein coding gene	Chr6:86149145-86155406 (+)
C57BL/6NJ	ENSMUSG00215034051	lncRNA gene	Chr6:86149122-86155517 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006385	lincRNA gene	Chr6:85244742-85248948 (+)
CAST/EiJ	ENSTCUG00005018341	lncRNA gene	Chr6:86065861-86072222 (+)
CBA/J	ENSMUSG00210045337	lncRNA gene	Chr6:85956848-85963246 (+)
DBA/2J	ENSMUSG00185046054	lncRNA gene	Chr6:86504117-86510515 (+)
FVB/NJ	ENSMUSG00205041187	lncRNA gene	Chr6:85130404-85136802 (+)
JF1/MsJ	ENSUMUG00000048402	lncRNA gene	Chr6:85434894-85441313 (+)
LP/J	ENSMUSG00230050378	lncRNA gene	Chr6:87638884-87645283 (+)
NOD/ShiLtJ	ENSMUSG00190045474	lncRNA gene	Chr6:85575970-85582371 (+)
NZO/HlLtJ	ENSMUSG00225021426	lncRNA gene	Chr6:89604753-89611135 (+)
PWK/PhJ	ENSLUMG00010035146	lncRNA gene	Chr6:84845946-84852351 (+)
SPRET/EiJ	ENSMSPG00010045132	lncRNA gene	Chr6:86987989-86994364 (+)
WSB/EiJ	ENSIUOG00005033291	lncRNA gene	Chr6:86487654-86494052 (+)

Homology

• Gene Tree
  Gm1965
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm1965
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  12

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  5
• UniProt
  2
• CCDS
  CCDS51845.1

• Ensembl
  ENSMUSG00000090254 (Evidence)
• NCBI Gene
  434065

Representative Sequences			Length	Strain/Species
genomic	434065	NCBI Gene Model | MGI Sequence Detail	6377	C57BL/6J
transcript	NR_121593	RefSeq | MGI Sequence Detail	2433	C57BL/6
polypeptide	Q3UTD5	UniProt | EBI | MGI Sequence Detail	142	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 12

  cDNA 12

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:2141555, MGI:2141566, MGI:2141576, MGI:2141774

References

• Summaries
  All 22

  Phenotypes 6
• Earliest
  J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for Gm1965:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57617	Chr6:89117974-89117996 (+)	9 bp