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Mindy4 Gene Detail
Summary
  • Symbol
    Mindy4
  • Name
    MINDY lysine 48 deubiquitinase 4
  • Synonyms
    C330043M08Rik, Fam188b, LOC384387
  • Feature Type
    protein coding gene
  • IDs
    MGI:3583959
    NCBI Gene: 330323
  • Gene Overview
    MyGene.info: MINDY4
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:55203383-55320222 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 27.38 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    887 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3583959
protein coding gene Chr6:55203345-55320223 (.)
129S1/SvImJ MGP_129S1SvImJ_G0030771
protein coding gene Chr6:54604955-54721742 (+)
A/J MGP_AJ_G0030740
protein coding gene Chr6:52067684-52181152 (+)
AKR/J MGP_AKRJ_G0030667
protein coding gene Chr6:53840854-53956954 (+)
BALB/cJ MGP_BALBcJ_G0030752
protein coding gene Chr6:52444067-52553884 (+)
C3H/HeJ MGP_C3HHeJ_G0030465
protein coding gene Chr6:53862789-53980634 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031207
protein coding gene Chr6:55822320-55948929 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028413
protein coding gene Chr6:49675238-49790577 (+)
CAST/EiJ MGP_CASTEiJ_G0029868
protein coding gene Chr6:53713232-53832119 (+)
CBA/J MGP_CBAJ_G0030439
protein coding gene Chr6:58122094-58244358 (+)
DBA/2J MGP_DBA2J_G0030589
protein coding gene Chr6:51967150-52079982 (+)
FVB/NJ MGP_FVBNJ_G0030541
protein coding gene Chr6:51562130-51679433 (+)
LP/J MGP_LPJ_G0030674
protein coding gene Chr6:54539038-54656084 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030575
protein coding gene Chr6:60627504-60746850 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031237
protein coding gene Chr6:53805057-53927024 (+)
PWK/PhJ MGP_PWKPhJ_G0029581
protein coding gene Chr6:51633539-51745228 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029415
protein coding gene Chr6:53191602-53308965 (+)
WSB/EiJ MGP_WSBEiJ_G0029945
protein coding gene Chr6:53833889-53955923 (+)



Homology
more
  • Human Ortholog
    MINDY4, MINDY lysine 48 deubiquitinase 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    MINDY4, MINDY lysine 48 deubiquitinase 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    AQP1, AQP-1, C7orf67, CHIP28, FAM188B
  • Links
    NCBI Gene ID: 84182
    neXtProt AC: NX_Q4G0A6
    UniProt: Q4G0A6

  • Chr Location
    7p14.3; chr7:30771417-30892387 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038022 Ensembl Gene Model | MGI Sequence Detail 116840 C57BL/6J ±  kb
transcript ENSMUST00000053094 Ensembl | MGI Sequence Detail 4270 Not Applicable  
polypeptide ENSMUSP00000061221 Ensembl | MGI Sequence Detail 744 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • EC
  • InterPro Domains
    IPR025257 Domain of unknown function DUF4205
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 2
Other
Accession IDs
less
MGI:2686252
References
more
  • Summaries
    All 22
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory