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BC089597
Gene Detail
Symbol

Name
ID
BC089597
cDNA sequence BC089597
MGI:3583955
Feature Type
protein coding gene
Genetic Map
Chromosome 10
76.39 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr10:127866474-127877317 bp, + strand
From VEGA annotation of GRCm38

  10844 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:129514  Vertebrate Homology Class
1 human; 5 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 8 western clawed frog; 1 zebrafish

HCOP human homology predictions: RDH16
Protein SuperFamily: retinol dehydrogenase
Gene Tree: BC089597

Human
homologs
RDH16, retinol dehydrogenase 16 (all-trans)
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 8608
neXtProt AC: NX_O75452

Human Synonyms: RODH-4, SDR9C8

Human Chr (Location): 12q13.3; chr12:56951431-56959374 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from APF )
Interactions
BC089597 interacts with 21 markers (Mir10b, Mir207, Mir335, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (45)    Tissues (45)    Images (1)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 45
cDNA source data(25)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(25) cDNA(25)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000027656 (Evidence)
Ensembl Gene Model ENSMUSG00000074639 (Evidence)
Entrez Gene 216454 (Evidence)
UniGene 214923
DFCI TC1596104, TC1584822
DoTS DT.97385189, DT.110597907, DT.87060809
NIA Mouse Gene Index U152539
Consensus CDS Project CCDS24254.1
International Mouse Phenotyping Consortium Status BC089597
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027656 VEGA Gene Model | MGI Sequence Detail 10844 C57BL/6J ±  kb
transcript OTTMUST00000068435 VEGA | MGI Sequence Detail 1265 Not Applicable 
polypeptide OTTMUSP00000034605 VEGA | MGI Sequence Detail 318 Not Applicable 

For the selected sequences
All sequences(25) RefSeq(2) UniProt(4)
Polymorphisms
SNPs within 2kb(151 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002347 Glucose/ribitol dehydrogenase
InterPro IPR016040 NAD(P)-binding domain
InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
InterPro IPR002198 Short-chain dehydrogenase/reductase SDR
References
(Earliest) J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. http://www.gudmap.org. 2004;
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(21)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory