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BC089597 Gene Detail
Summary
  • Symbol
    BC089597
  • Name
    cDNA sequence BC089597
  • Feature Type
    protein coding gene
  • IDs
    MGI:3583955
    NCBI Gene: 216454
Location & Maps
more
  • Sequence Map
    Chr10:127866474-127877317 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      10844 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 76.39 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    RDH16, retinol dehydrogenase 16 (all-trans)
  • Vertebrate Orthologs
    22
  • Human Ortholog
    RDH16, retinol dehydrogenase 16 (all-trans)
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RODH-4, SDR9C8
  • Links
    NCBI Gene ID: 8608
    neXtProt AC: NX_O75452

  • Chr Location
    12q13.3; chr12:56951431-56959374 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
  • All Mutations and Alleles
    2
  • Targeted
    2
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027656 VEGA Gene Model | MGI Sequence Detail 10844 C57BL/6J ±  kb
transcript OTTMUST00000068435 VEGA | MGI Sequence Detail 1265 Not Applicable  
polypeptide OTTMUSP00000034605 VEGA | MGI Sequence Detail 318 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    150 from dbSNP Build 142
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR016040 NAD(P)-binding domain
    IPR020904 Short-chain dehydrogenase/reductase, conserved site
    IPR002347 Short-chain dehydrogenase/reductase SDR
Molecular
Reagents
less
  • All nucleic 25
    cDNA 25

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Developmental Gene Expression 2
    Phenotypes 2
  • Earliest
    J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. http://www.gudmap.org. 2004;
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory