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A330069E16Rik Gene Detail
Summary
  • Symbol
    A330069E16Rik
  • Name
    RIKEN cDNA A330069E16 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3583899
    NCBI Gene: 606735
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:91237146-91238352 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 50.59 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3583899
lncRNA gene Chr2:91237146-91238357 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005959
lincRNA gene Chr2:92554516-92555722 (+)
A/J MGP_AJ_G0005952
lincRNA gene Chr2:88849195-88850400 (+)
AKR/J MGP_AKRJ_G0005927
lincRNA gene Chr2:91303016-91304222 (+)
BALB/cJ MGP_BALBcJ_G0005930
lincRNA gene Chr2:89030390-89031595 (+)
C3H/HeJ MGP_C3HHeJ_G0005878
lincRNA gene Chr2:91584062-91585268 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006091
lincRNA gene Chr2:95815579-95816785 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0005814
lincRNA gene Chr2:92113514-92115644 (+)
CBA/J MGP_CBAJ_G0005863
lincRNA gene Chr2:99070897-99072103 (+)
DBA/2J MGP_DBA2J_G0005884
lincRNA gene Chr2:88448747-88449952 (+)
FVB/NJ MGP_FVBNJ_G0005909
lincRNA gene Chr2:87558154-87559789 (+)
LP/J MGP_LPJ_G0005964
lincRNA gene Chr2:92766171-92767376 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005896
lincRNA gene Chr2:102104235-102105440 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006088
lincRNA gene Chr2:91375708-91376913 (+)
PWK/PhJ MGP_PWKPhJ_G0005763
lincRNA gene Chr2:88178555-88179829 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005674
lincRNA gene Chr2:90943031-90944228 (+)
WSB/EiJ MGP_WSBEiJ_G0005867
lincRNA gene Chr2:91974908-91976113 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Gene trapped
    5
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving A330069E16Rik
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097868 Ensembl Gene Model | MGI Sequence Detail 1207 C57BL/6J ±  kb
transcript ENSMUST00000181191 Ensembl | MGI Sequence Detail 887 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 18
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory