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Nlrp1c-ps Pseudogene Detail
Summary
  • Symbol
    Nlrp1c-ps
  • Name
    NLR family, pyrin domain containing 1C, pseudogene
  • Synonyms
    Nalp1c, OTTMUSG00000006090
  • Feature Type
    pseudogene
  • IDs
    MGI:3582962
    NCBI Gene: 627984
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:71242430-71285232 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 43.29 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    147 from dbSNP Build 142
  • Strain Annotations
    4
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3582962
pseudogene Chr11:71242430-71285232 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0039790
pseudogene Chr11:69096709-69140576 (-)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0040327
pseudogene Chr11:73992409-74035303 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0038770
pseudogene Chr11:71163097-71205253 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Expression
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 627984 NCBI Gene Model | MGI Sequence Detail 42803 C57BL/6J ±  kb
transcript NR_027858 RefSeq | MGI Sequence Detail 3457 C57BL/6  
For the selected sequence
Other
Accession IDs
less
MGI:3649707
References
more
  • Summaries
    All 20
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:267658 Tye H, et al., NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease. Nat Commun. 2018 Sep 13;9(1):3728

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/18/2020
MGI 6.14
The Jackson Laboratory