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Pramel20 Gene Detail
Summary
  • Symbol
    Pramel20
  • Name
    PRAME like 20
  • Synonyms
    BC080695
  • Feature Type
    protein coding gene
  • IDs
    MGI:3525148
    NCBI Gene: 329986
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr4:143294045-143300368 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 77.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3525148
protein coding gene Chr4:143294037-143300368 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029074
protein coding gene Chr4:146816596-147722328 (+)
A/J MGP_AJ_G0029053
protein coding gene Chr4:141426461-141445513 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0029055
protein coding gene Chr4:141073431-141104409 (+)
C3H/HeJ MGP_C3HHeJ_G0028770
protein coding gene Chr4:144829698-144870375 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029504
protein coding gene Chr4:152189633-152192352 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0028748
protein coding gene Chr4:157450292-157470349 (+)
DBA/2J MGP_DBA2J_G0028885
protein coding gene Chr4:140694848-140725335 (+)
FVB/NJ MGP_FVBNJ_G0028856
protein coding gene Chr4:140341317-140347482 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0028888
protein coding gene Chr4:160571391-160582308 (-)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0027747
protein coding gene Chr4:140779495-140785188 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    PRAMEF1, PRAME family member 1
  • Vertebrate Orthologs
    19
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PRAMEF1, PRAME family member 1
  • Links
    NCBI Gene ID: 65121
    neXtProt AC: NX_O95521
    UniProt: O95521

  • Chr Location
    1p36.21; chr1:12791397-12796628 (+)  GRCh38.p7




  • Human Ortholog
    PRAMEF13, PRAME family member 13
  • Links
    NCBI Gene ID: 400736
    neXtProt AC: NX_Q5VWM6

  • Chr Location
    1p36.21; chr1:13196188-13201409 (-)  GRCh38.p7

  • Human Ortholog
    PRAMEF14, PRAME family member 14
  • Links
    NCBI Gene ID: 729528
    UniProt: Q5SWL7

  • Chr Location
    1p36.21; chr1:13341892-13347134 (-)  GRCh38.p7



  • Human Ortholog
    PRAMEF18, PRAME family member 18
  • Links
    NCBI Gene ID: 391003
    neXtProt AC: NX_Q5VWM3

  • Chr Location
    1p36.21; chr1:13222695-13226154 (-)  GRCh38.p7


  • Human Ortholog
    PRAMEF2, PRAME family member 2
  • Synonyms
    DJ845O24.3
  • Links
    NCBI Gene ID: 65122
    neXtProt AC: NX_O60811
    UniProt: O60811

  • Chr Location
    1p36.21; chr1:12857086-12861909 (+)  GRCh38.p7

  • Human Ortholog
    PRAMEF20, PRAME family member 20
  • Synonyms
    PRAMEF21
  • Links
    NCBI Gene ID: 645425
    neXtProt AC: NX_Q5VT98
    UniProt: Q5VT98

  • Chr Location
    1p36.21; chr1:13410450-13421328 (+)  GRCh38.p7




  • Human Ortholog
    PRAMEF5, PRAME family member 5
  • Synonyms
    PRAMEF23, PRAMEF5L
  • Links
    NCBI Gene ID: 343068
    neXtProt AC: NX_Q5TYX0
    UniProt: Q5TYX0

  • Chr Location
    1p36.21; chr1:13254198-13263435 (+)  GRCh38.p7



  • Human Ortholog
    PRAMEF8, PRAME family member 8
  • Synonyms
    PRAMEF24
  • Links
    NCBI Gene ID: 391002
    neXtProt AC: NX_Q5VWM4
    UniProt: Q5VWM4

  • Chr Location
    1p36.21; chr1:13281223-13285137 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000070618 Ensembl Gene Model | MGI Sequence Detail 6324 C57BL/6J ±  kb
transcript ENSMUST00000105774 Ensembl | MGI Sequence Detail 2095 Not Applicable  
polypeptide ENSMUSP00000101400 Ensembl | MGI Sequence Detail 481 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR032675 Leucine-rich repeat domain superfamily
    IPR026271 PRAME family
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/12/2021
MGI 6.17
The Jackson Laboratory