About   Help   FAQ
AY512931 Gene Detail
Summary
  • Symbol
    AY512931
  • Name
    cDNA sequence AY512931
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3525069
    NCBI Gene: 434310
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr8:45513739-45518455 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 24.94 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3525069
 lncRNA gene Chr8:45513739-45518455 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015712
 unclassified non-coding RNA gene Chr8:44081265-44085809 (-)
A/J MGP_AJ_G0015690
 unclassified non-coding RNA gene Chr8:42398289-42402738 (-)
AKR/J MGP_AKRJ_G0015653
 unclassified non-coding RNA gene Chr8:43628153-43646253 (-)
BALB/cJ MGP_BALBcJ_G0015651
 unclassified non-coding RNA gene Chr8:42561198-42566088 (-)
C3H/HeJ MGP_C3HHeJ_G0015473
 unclassified non-coding RNA gene Chr8:44143980-44148356 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016106
 unclassified non-coding RNA gene Chr8:45755067-45760920 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0015028
 unclassified non-coding RNA gene Chr8:43574491-43578935 (-)
CBA/J MGP_CBAJ_G0015454
 unclassified non-coding RNA gene Chr8:47599883-47608540 (-)
DBA/2J MGP_DBA2J_G0015550
 unclassified non-coding RNA gene Chr8:42211638-42217127 (-)
FVB/NJ MGP_FVBNJ_G0015556
 unclassified non-coding RNA gene Chr8:41711467-41715784 (-)
LP/J MGP_LPJ_G0015630
 unclassified non-coding RNA gene Chr8:44108267-44113524 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015578
 unclassified non-coding RNA gene Chr8:47694019-47701225 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016148
 unclassified non-coding RNA gene Chr8:43794923-43800649 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 434310 NCBI Gene Model | MGI Sequence Detail 4717 C57BL/6J ±  kb
transcript NR_033588 RefSeq | MGI Sequence Detail 2395 C57BL/6  
polypeptide Q6R5F1 UniProt | EBI | MGI Sequence Detail 128 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4
References
more
  • Summaries
    All 12
    Phenotypes 2
  • Earliest
    J:87784 Sharov AA, et al., Transcriptome Analysis of Mouse Stem Cells and Early Embryos. PLoS Biol. 2003 Dec;1(3):E74
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory