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Clec2f Gene Detail
Summary
  • Symbol
    Clec2f
  • Name
    C-type lectin domain family 2, member f
  • Synonyms
    Clec2f-ps, Clrc, Clrz
  • Feature Type
    protein coding gene
  • IDs
    MGI:3522133
    NCBI Gene: 435921
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:128991075-128997490 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 63.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    118 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3522133
protein coding gene Chr6:128985766-128998305 (+)
129S1/SvImJ MGP_129S1SvImJ_G0039837
pseudogene Chr6:132669889-132675873 (+)
A/J MGP_AJ_G0039839
pseudogene Chr6:127592645-127599068 (+)
AKR/J MGP_AKRJ_G0039765
pseudogene Chr6:131060932-131067355 (+)
BALB/cJ MGP_BALBcJ_G0039811
pseudogene Chr6:127215688-127222111 (+)
C3H/HeJ MGP_C3HHeJ_G0039465
pseudogene Chr6:131253672-131260095 (+)
C57BL/6NJ MGP_C57BL6NJ_G0040381
pseudogene Chr6:136152558-136158973 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036982
pseudogene Chr6:125101218-125104234 (+)
CAST/EiJ MGP_CASTEiJ_G0038575
pseudogene Chr6:131460855-131467261 (+)
CBA/J MGP_CBAJ_G0039434
pseudogene Chr6:141493062-141499485 (+)
DBA/2J MGP_DBA2J_G0039634
pseudogene Chr6:126536328-126543551 (+)
FVB/NJ MGP_FVBNJ_G0039593
pseudogene Chr6:125431711-125437691 (+)
LP/J MGP_LPJ_G0039672
pseudogene Chr6:132859912-132866335 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0039592
pseudogene Chr6:145320560-145326978 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0040482
pseudogene Chr6:131126629-131133064 (+)
PWK/PhJ MGP_PWKPhJ_G0038252
pseudogene Chr6:124821755-124828252 (+)
SPRET/EiJ MGP_SPRETEiJ_G0037997
pseudogene Chr6:129154209-129160655 (+)
WSB/EiJ MGP_WSBEiJ_G0038806
pseudogene Chr6:131498212-131543910 (+)



Homology
more
  • Human Ortholog
    CLEC2A, C-type lectin domain family 2 member A
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLEC2A, C-type lectin domain family 2 member A
  • Synonyms
    INPE5792, KACL, PILAR, UNQ5792
  • Links
    NCBI Gene ID: 387836
    neXtProt AC: NX_Q6UVW9
    UniProt: Q6UVW9

  • Chr Location
    12p13.31; chr12:9882733-9932430 (-)  GRCh38.p7

  • Human Ortholog
    CLEC2D, C-type lectin domain family 2 member D
  • Synonyms
    CLAX, LLT1, OCIL
  • Links
    NCBI Gene ID: 29121
    neXtProt AC: NX_Q9UHP7
    UniProt: Q9UHP7

  • Chr Location
    12p13.31; chr12:9669708-9699555 (+)  GRCh38.p7

Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000089728 Ensembl Gene Model | MGI Sequence Detail 6416 C57BL/6J ±  kb
transcript ENSMUST00000204981 Ensembl | MGI Sequence Detail 657 Not Applicable  
polypeptide ENSMUSP00000158978 Ensembl | MGI Sequence Detail 208 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
References
more
  • Summaries
    All 13
    Gene Ontology 2
  • Earliest
    J:150111 Aust JG, et al., The expression and function of the NKRP1 receptor family in C57BL/6 mice. J Immunol. 2009 Jul 1;183(1):106-16
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/23/2022
MGI 6.20
The Jackson Laboratory