About   Help   FAQ
Tmprss11c
Gene Detail
 Symbol
Name
ID
Tmprss11c
transmembrane protease, serine 11c
MGI:3521861
Feature Type protein coding gene
Genetic Map
Chromosome 5
43.56 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr5:86231481-86289308 bp, - strand
From VEGA annotation of GRCm38

  57828 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:78847  Vertebrate Homology Class
1 mouse; 1 rat; 1 cattle; 1 dog; 1 chicken

Protein SuperFamily: transmembrane serine protease, TMPRSS11A type
Gene Tree: Tmprss11c

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Tmprss11c interacts with 52 markers (Mir19a, Mir19b-1, Mir19b-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process proteolysis
Component integral component of membrane, membrane
Function hydrolase activity, peptidase activity, ...
External Resources: FuncBase
Expression
cDNA source data(2)
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(2) cDNA(2)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000024267 (Evidence)
Ensembl Gene ModelENSMUSG00000061184 (Evidence)
Entrez Gene435845 (Evidence)
UniGene359654
DoTSDT.110700763
NIA Mouse Gene IndexU202645
Consensus CDS ProjectCCDS19380.1
International Mouse Knockout Project StatusTmprss11c
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024267 VEGA Gene Model | MGI Sequence Detail 57828 C57BL/6J ±  kb
transcript OTTMUST00000059414 VEGA | MGI Sequence Detail 1615 Not Applicable 
polypeptide OTTMUSP00000028895 VEGA | MGI Sequence Detail 431 Not Applicable 

For the selected sequences
All sequences(15) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(383 from dbSNP Build 137)    SNPs within 2kb including multiple locations(391)
Protein-related
information
ResourceIDDescription
InterPro IPR001254 Peptidase S1
InterPro IPR001314 Peptidase S1A, chymotrypsin-type
InterPro IPR017329 Peptidase S1A, HAT/DESC1
InterPro IPR018114 Peptidase S1, trypsin family, active site
InterPro IPR000082 SEA domain
InterPro IPR009003 Trypsin-like cysteine/serine peptidase domain
References (Earliest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(20)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/23/2014
MGI 5.19
The Jackson Laboratory