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Cbx6
Gene Detail
Symbol

Name
ID
Cbx6
chromobox 6
MGI:3512628
Feature Type
protein coding gene
Genetic Map
Chromosome 15
37.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:79823896-79834688 bp, - strand
From VEGA annotation of GRCm38

  10793 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8619  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Cbx6

Human
homologs
Human Homolog CBX6, chromobox homolog 6
NCBI Gene ID 23466
neXtProt AC  NX_O95503
Human Chr (Location)  22q13.1; chr22:38861463-38872292 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Radiation induced(1) Targeted(4)
Genomic Mutations involving Cbx6 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cbx6 interacts with 345 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process chromatin modification, negative regulation of transcription from RNA polymerase II promoter, ...
Component heterochromatin, nucleus, ...
Function single-stranded RNA binding
External Resources: FuncBase
Expression
cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(16) Genomic(1) cDNA(15)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000017454 (Evidence)
Ensembl Gene ModelENSMUSG00000089715 (Evidence)
Entrez Gene494448 (Evidence)
DFCITC1579596, TC1774200, TC1573968
DoTSDT.97405219, DT.40167491, DT.97342282, DT.99866238, DT.94308697, DT.110807565, DT.99854877, DT.94368947
Consensus CDS ProjectCCDS37142.1
International Mouse Knockout Project StatusCbx6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017454 VEGA Gene Model | MGI Sequence Detail 10793 C57BL/6J ±  kb
transcript OTTMUST00000042382 VEGA | MGI Sequence Detail 5806 Not Applicable 
polypeptide OTTMUSP00000019047 VEGA | MGI Sequence Detail 414 Not Applicable 

For the selected sequences
All sequences(95) RefSeq(2) UniProt(9)
Polymorphisms
SNPs within 2kb(39 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023780 Chromo domain
InterPro IPR023779 Chromo domain, conserved site
InterPro IPR016197 Chromo domain-like
InterPro IPR000953 Chromo domain/shadow
InterPro IPR017984 Chromo domain subgroup
Protein Ontology PR:000005087 chromobox protein homolog 6
References
(Earliest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory