Slfn10-ps Pseudogene Detail

Summary

• Symbol
  Slfn10-ps
• Name
  schlafen 10, pseudogene

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3512288
  NCBI Gene: 237887
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:82918956-82930868 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 50.30 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  220 from dbSNP Build 142
• Strain Annotations
  13

• Strain-Specific Marker

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3512288	pseudogene	Chr11:82918949-82931359 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039794	pseudogene	Chr11:84349499-84366616 (-)
A/J	MGP_AJ_G0039793	pseudogene	Chr11:81078779-81107584 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0039767	pseudogene	Chr11:81439708-81520872 (-)
C3H/HeJ	MGP_C3HHeJ_G0039423	pseudogene	Chr11:83563210-83575152 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040330	pseudogene	Chr11:86795424-86881532 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036948	pseudogene	Chr11:78009753-78021950 (-)
CAST/EiJ	MGP_CASTEiJ_G0038538	pseudogene	Chr11:84185110-84199726 (-)
CBA/J	MGP_CBAJ_G0039395	pseudogene	Chr11:90615296-90625702 (-)
DBA/2J	MGP_DBA2J_G0039593	pseudogene	Chr11:80648937-80704339 (-)
FVB/NJ	MGP_FVBNJ_G0039550	pseudogene	Chr11:80200276-80207321 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039551	pseudogene	Chr11:90746500-90822236 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038217	pseudogene	Chr11:81483347-81499220 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Slfn10-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Slfn10-ps
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  32 strains or lines available

Expression

• Assay Results
  672
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Interactions

• Slfn10-ps interacts with 115 markers (Mir9-1, Mir9-2, Mir9-3, ...) View All

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  4
• CCDS
  CCDS36252.1

• Ensembl
  ENSMUSG00000072621 (Evidence)
• NCBI Gene
  237887

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072621	Ensembl Gene Model | MGI Sequence Detail	11913	C57BL/6J
transcript	ENSMUST00000100716	Ensembl | MGI Sequence Detail	3621	Not Applicable
polypeptide	NP_001342442	RefSeq | MGI Sequence Detail	928	CAST/EiJ

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:152085 Bustos O, et al., Evolution of the Schlafen genes, a gene family associated with embryonic lethality, meiotic drive, immune processes and orthopoxvirus virulence. Gene. 2009 Nov 1;447(1):1-11

TSS for Slfn10-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109635	Chr11:82931309-82931344 (-)	-459 bp
Tssr109634	Chr11:82931297-82931306 (-)	-434 bp
Tssr109633	Chr11:82931242-82931258 (-)	-382 bp
Tssr109632	Chr11:82931019-82931045 (-)	-164 bp