Calm5 Gene Detail

Summary

• Symbol
  Calm5
• Name
  calmodulin 5
• Synonyms
  Scarf2

• Feature Type
  protein coding gene
• IDs
  MGI:3511177
  NCBI Gene: 494124
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:3904173-3904761 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 2.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3511177	protein coding gene	Chr13:3904173-3904761 (+)
129S1/SvImJ	ENSMUSG00200005533	protein coding gene	Chr13:1082133-1082721 (+)
A/J	ENSMUSG00195011955	protein coding gene	Chr13:490290-490878 (+)
AKR/J	ENSMUSG00220012780	protein coding gene	Chr13:772971-773559 (+)
BALB/cJ	ENSMUSG00180008887	protein coding gene	Chr13:902491-903079 (+)
C3H/HeJ	ENSMUSG00175008161	protein coding gene	Chr13:926112-926700 (+)
C57BL/6NJ	ENSMUSG00215009354	protein coding gene	Chr13:1145927-1146515 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018196	protein coding gene	Chr13:362305-363205 (+)
CAST/EiJ	ENSTCUG00005023998	protein coding gene	Chr13:1146561-1147148 (+)
CBA/J	ENSMUSG00210022691	protein coding gene	Chr13:464817-465405 (+)
DBA/2J	ENSMUSG00185023253	protein coding gene	Chr13:1152546-1153134 (+)
FVB/NJ	ENSMUSG00205015900	protein coding gene	Chr13:904132-904720 (+)
JF1/MsJ	ENSUMUG00000005444	protein coding gene	Chr13:1148727-1165193 (+)
LP/J	ENSMUSG00230007221	protein coding gene	Chr13:10621223-10637688 (+)
NOD/ShiLtJ	ENSMUSG00190012905	protein coding gene	Chr13:610219-610807 (+)
NZO/HlLtJ	ENSMUSG00225033937	protein coding gene	Chr13:4508881-4525349 (+)
PWK/PhJ	ENSLUMG00010016450	protein coding gene	Chr13:528732-529208 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005021173	protein coding gene	Chr13:498862-499450 (+)

Homology

• Human Ortholog
  CALML5, calmodulin like 5

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CALML5, calmodulin like 5
  
• Synonyms
  CLSP
• Links
  HGNC:18180

  NCBI Gene ID: 51806

  UniProt: Q9NZT1

  
  
• Chr Location
  10p15.1; chr10:5498697-5499570 (-)  GRCh38

---

• MGI Vertebrate Homology
  Calm5 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: CALML5
• Gene Tree
  Calm5
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  3

Expression

• Assay Results
  637
• Tissues
  28
• cDNA Data
  2
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  4
• CCDS
  CCDS59581.1

• Ensembl
  ENSMUSG00000099269 (Evidence)
• NCBI Gene
  494124

Representative Sequences			Length	Strain/Species
genomic	494124	NCBI Gene Model | MGI Sequence Detail	589	C57BL/6J
transcript	NM_001008706	RefSeq | MGI Sequence Detail	549	C57BL/6
polypeptide	NP_001008706	RefSeq | MGI Sequence Detail	140	C57BL/6

Protein
Information

• UniProt
  4 Sequences
• InterPro Domains
  IPR050230 Calmodulin/Myosin light chain/Troponin C-like
  IPR050145 Centrin/CML-like
  IPR018247 EF-Hand 1, calcium-binding site
  IPR002048 EF-hand domain
  IPR011992 EF-hand domain pair

Molecular
Reagents

• All nucleic 2

  cDNA 2

  Antibodies 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Developmental Gene Expression 2

  Gene Ontology 3
• Earliest
  J:86731 Hwang M, et al., The novel murine Ca2+-binding protein, Scarf, is differentially expressed during epidermal differentiation. J Biol Chem. 2003 Nov 28;278(48):47827-33
• Latest
  J:320850 Lessard JC, et al., Calmodulin 4 is dispensable for epidermal barrier formation and wound healing in mice. Exp Dermatol. 2015 Jan;24(1):55-7