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Calm5 Gene Detail
Summary
  • Symbol
    Calm5
  • Name
    calmodulin 5
  • Synonyms
    Scarf2
  • Feature Type
    protein coding gene
  • IDs
    MGI:3511177
    NCBI Gene: 494124
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr13:3854173-3854761 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 2.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    30 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3511177
protein coding gene Chr13:3854173-3854761 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020198
protein coding gene Chr13:331306-340662 (+)
A/J MGP_AJ_G0020154
protein coding gene Chr13:425365-426267 (+)
AKR/J MGP_AKRJ_G0020129
protein coding gene Chr13:427147-437239 (+)
BALB/cJ MGP_BALBcJ_G0020137
protein coding gene Chr13:429894-440107 (+)
C3H/HeJ MGP_C3HHeJ_G0019940
protein coding gene Chr13:483904-515394 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020584
protein coding gene Chr13:401569-408769 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018196
protein coding gene Chr13:362305-363205 (+)
CAST/EiJ MGP_CASTEiJ_G0019481
protein coding gene Chr13:345043-346753 (+)
CBA/J MGP_CBAJ_G0019908
protein coding gene Chr13:395843-404703 (+)
DBA/2J MGP_DBA2J_G0020025
protein coding gene Chr13:335005-335833 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0020098
protein coding gene Chr13:389206-389758 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0020612
protein coding gene Chr13:426977-427773 (+)
PWK/PhJ MGP_PWKPhJ_G0019243
protein coding gene Chr13:419272-419834 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019048
protein coding gene Chr13:443526-444428 (+)
WSB/EiJ MGP_WSBEiJ_G0019539
protein coding gene Chr13:335847-353597 (+)



Homology
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 494124 NCBI Gene Model | MGI Sequence Detail 589 C57BL/6J ±  kb
transcript NM_001008706 RefSeq | MGI Sequence Detail 549 C57BL/6  
polypeptide NP_001008706 RefSeq | MGI Sequence Detail 140 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 11
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:86731 Hwang M, et al., The novel murine Ca2+-binding protein, Scarf, is differentially expressed during epidermal differentiation. J Biol Chem. 2003 Nov 28;278(48):47827-33
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/23/2021
MGI 6.16
The Jackson Laboratory