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BC048679 Gene Detail
Summary
  • Symbol
    BC048679
  • Name
    cDNA sequence BC048679
  • Feature Type
    protein coding gene
  • IDs
    MGI:3510776
    NCBI Gene: 210321
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:81494275-81498281 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 45.71 cM, cytoband D2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3510776
protein coding gene Chr7:81494274-81498330 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032430
protein coding gene Chr7:83558334-83562343 (-)
A/J MGP_AJ_G0032409
protein coding gene Chr7:81579033-81583043 (-)
AKR/J MGP_AKRJ_G0032345
protein coding gene Chr7:83385159-83389169 (-)
BALB/cJ MGP_BALBcJ_G0032421
protein coding gene Chr7:81239355-81243365 (-)
C3H/HeJ MGP_C3HHeJ_G0032134
protein coding gene Chr7:84001192-84005201 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032913
protein coding gene Chr7:86822137-86826143 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029921
protein coding gene Chr7:84055970-84058568 (-)
CAST/EiJ MGP_CASTEiJ_G0031462
protein coding gene Chr7:74935773-74939882 (-)
CBA/J MGP_CBAJ_G0032100
protein coding gene Chr7:89733831-89737836 (-)
DBA/2J MGP_DBA2J_G0032255
protein coding gene Chr7:80114328-80118337 (-)
FVB/NJ MGP_FVBNJ_G0032210
protein coding gene Chr7:80054431-80058437 (-)
LP/J MGP_LPJ_G0032336
protein coding gene Chr7:84791252-84795261 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032247
protein coding gene Chr7:89796760-89800770 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032931
protein coding gene Chr7:82795753-82799772 (-)
PWK/PhJ MGP_PWKPhJ_G0031182
protein coding gene Chr7:73326339-73330437 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031023
protein coding gene Chr7:69803044-69807065 (-)
WSB/EiJ MGP_WSBEiJ_G0031580
protein coding gene Chr7:83160814-83164819 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061877 Ensembl Gene Model | MGI Sequence Detail 4007 C57BL/6J ±  kb
transcript ENSMUST00000144156 Ensembl | MGI Sequence Detail 640 Not Applicable  
polypeptide ENSMUSP00000120616 Ensembl | MGI Sequence Detail 172 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR000064 Endopeptidase, NLPC/P60 domain
    IPR038765 Papain-like cysteine peptidase superfamily
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 28
    Phenotypes 16
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/19/2020
MGI 6.15
The Jackson Laboratory