About   Help   FAQ
Pdzrn4 Gene Detail
Summary
  • Symbol
    Pdzrn4
  • Name
    PDZ domain containing RING finger 4
  • Synonyms
    1110017D07Rik, LNX4, mKIAA3027, SAMCAP3L
  • Feature Type
    protein coding gene
  • IDs
    MGI:3056996
    NCBI Gene: 239618
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:92396881-92771819 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 46.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2664 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3056996
protein coding gene Chr15:92396810-92771827 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022252
protein coding gene Chr15:93765854-94150655 (+)
A/J MGP_AJ_G0022211
protein coding gene Chr15:90155557-90516593 (+)
AKR/J MGP_AKRJ_G0022186
protein coding gene Chr15:92813483-93188079 (+)
BALB/cJ MGP_BALBcJ_G0022217
protein coding gene Chr15:90260962-90639088 (+)
C3H/HeJ MGP_C3HHeJ_G0021987
protein coding gene Chr15:92828164-93214694 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022662
protein coding gene Chr15:97177094-97589103 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020188
protein coding gene Chr15:86246719-86603011 (+)
CAST/EiJ MGP_CASTEiJ_G0021509
protein coding gene Chr15:93650006-94030538 (+)
CBA/J MGP_CBAJ_G0021954
protein coding gene Chr15:100510280-100915428 (+)
DBA/2J MGP_DBA2J_G0022081
protein coding gene Chr15:89589022-89955531 (+)
FVB/NJ MGP_FVBNJ_G0022060
protein coding gene Chr15:88612296-88978205 (+)
LP/J MGP_LPJ_G0022152
protein coding gene Chr15:93935499-94289641 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022080
protein coding gene Chr15:104847885-105249852 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022677
protein coding gene Chr15:92923700-93301126 (+)
PWK/PhJ MGP_PWKPhJ_G0021250
protein coding gene Chr15:89639515-90001495 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021084
protein coding gene Chr15:92666702-93053124 (+)
WSB/EiJ MGP_WSBEiJ_G0021558
protein coding gene Chr15:93394249-93776596 (+)



Homology
more
  • Human Ortholog
    PDZRN4, PDZ domain containing ring finger 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PDZRN4, PDZ domain containing ring finger 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LNX4, SAMCAP3L
  • Links
    NCBI Gene ID: 29951
    neXtProt AC: NX_Q6ZMN7
    UniProt: Q6ZMN7

  • Chr Location
    12q12; chr12:41188448-41574590 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000036218 Ensembl Gene Model | MGI Sequence Detail 374939 C57BL/6J ±  kb
transcript ENSMUST00000169942 Ensembl | MGI Sequence Detail 3102 Not Applicable  
polypeptide ENSMUSP00000133159 Ensembl | MGI Sequence Detail 1014 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
Other
Accession IDs
less
MGI:1920967
References
more
  • Summaries
    All 42
    Developmental Gene Expression 3
    Diseases 1
    Phenotypes 21
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
12/03/2019
MGI 6.14
The Jackson Laboratory