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Nanog-ps1 Pseudogene Detail
Summary
  • Symbol
    Nanog-ps1
  • Name
    Nanog pseudogene 1
  • Synonyms
    nanogPa
  • Feature Type
    pseudogene
  • IDs
    MGI:3051568
    NCBI Gene: 446215
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:88926995-88927244 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 39.95 cM, cytoband C1
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    25 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3051568
 pseudogene ChrX:88926771-88927244 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0013673
 pseudogene Chr6:121056799-121057043 (+)
AKR/J MGP_AKRJ_G0014528
 pseudogene ChrX:88443522-88443771 (-)
BALB/cJ MGP_BALBcJ_G0013654
 pseudogene Chr6:120764194-120764438 (+)
C3H/HeJ MGP_C3HHeJ_G0013498
 pseudogene Chr6:124365887-124366131 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015033
 pseudogene ChrX:88711781-88712030 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0009749
 pseudogene Chr11:117714893-117715169 (-)
CAST/EiJ MGP_CASTEiJ_G0014014
 pseudogene ChrX:71256414-71256663 (-)
CBA/J MGP_CBAJ_G0014375
 pseudogene ChrX:91227702-91227951 (-)
DBA/2J MGP_DBA2J_G0014456
 pseudogene ChrX:85512884-85513133 (-)
FVB/NJ MGP_FVBNJ_G0014443
 pseudogene ChrX:84915036-84915285 (-)
LP/J MGP_LPJ_G0014553
 pseudogene ChrX:86879148-86879397 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0014486
 pseudogene ChrX:95319159-95319408 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015000
 pseudogene ChrX:85794631-85794880 (-)
PWK/PhJ MGP_PWKPhJ_G0013822
 pseudogene ChrX:69198322-69198624 (+)
SPRET/EiJ MGP_SPRETEiJ_G0011684
 pseudogene Chr3:132604854-132605100 (-)
WSB/EiJ MGP_WSBEiJ_G0014090
 pseudogene ChrX:84669913-84670162 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000100506 Ensembl Gene Model | MGI Sequence Detail 250 C57BL/6J ±  kb
transcript ENSMUST00000188967 Ensembl | MGI Sequence Detail 250 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1
References
more
  • Summaries
    All 6
  • Earliest
    J:91586 Booth HA, et al., Eleven daughters of NANOG. Genomics. 2004 Aug;84(2):229-38
  • Latest
    J:95814 Hatano SY, et al., Pluripotential competence of cells associated with Nanog activity. Mech Dev. 2005 Jan;122(1):67-79
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory