4631405J19Rik Gene Detail

Summary

• Symbol
  4631405J19Rik
• Name
  RIKEN cDNA 4631405J19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3045383
  NCBI Gene: 433456
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:92859693-92863790 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 51.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3045383	lncRNA gene	Chr2:92858301-92875077 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015446	unclassified non-coding RNA gene	Chr2:94507137-94529518 (+)
A/J	MGP_AJ_G0015422	unclassified non-coding RNA gene	Chr2:90668536-90685882 (+)
AKR/J	MGP_AKRJ_G0015386	unclassified non-coding RNA gene	Chr2:93200692-93217422 (+)
BALB/cJ	MGP_BALBcJ_G0015385	unclassified non-coding RNA gene	Chr2:90859292-90876435 (+)
C3H/HeJ	MGP_C3HHeJ_G0015208	unclassified non-coding RNA gene	Chr2:93481168-93501813 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015839	unclassified non-coding RNA gene	Chr2:97728599-97746684 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013578	unclassified non-coding RNA gene	Chr2:87159313-87175334 (+)
CAST/EiJ	MGP_CASTEiJ_G0014760	unclassified non-coding RNA gene	Chr2:94053310-94072934 (+)
CBA/J	MGP_CBAJ_G0015189	unclassified non-coding RNA gene	Chr2:101124339-101145198 (+)
DBA/2J	MGP_DBA2J_G0015283	unclassified non-coding RNA gene	Chr2:90278182-90295349 (+)
FVB/NJ	MGP_FVBNJ_G0015290	unclassified non-coding RNA gene	Chr2:89380387-89402939 (+)
LP/J	MGP_LPJ_G0015361	unclassified non-coding RNA gene	Chr2:94698968-94717966 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015314	unclassified non-coding RNA gene	Chr2:104073325-104092771 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015879	unclassified non-coding RNA gene	Chr2:93278006-93297093 (+)
PWK/PhJ	MGP_PWKPhJ_G0014548	unclassified non-coding RNA gene	Chr2:90018020-90035386 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014336	unclassified non-coding RNA gene	Chr2:92844273-92860955 (+)
WSB/EiJ	MGP_WSBEiJ_G0014867	unclassified non-coding RNA gene	Chr2:93892383-93909842 (+)

Homology

• Gene Tree
  4631405J19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving 4631405J19Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000075027 (Evidence)
• NCBI Gene
  433456

Representative Sequences			Length	Strain/Species
genomic	433456	NCBI Gene Model | MGI Sequence Detail	4098	C57BL/6J
transcript	NR_110333	RefSeq | MGI Sequence Detail	1231	C57BL/6
polypeptide	Q8CEE4	UniProt | EBI | MGI Sequence Detail	174	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for 4631405J19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18973	Chr2:92858288-92858302 (+)	-1,398 bp
Tssr18974	Chr2:92860708-92860717 (+)	1,020 bp
Tssr18975	Chr2:92860718-92860761 (+)	1,047 bp
Tssr18976	Chr2:92860768-92860790 (+)	1,086 bp