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Ccser1 Gene Detail
Summary
  • Symbol
    Ccser1
  • Name
    coiled-coil serine rich 1
  • Synonyms
    6230405M12Rik, C130092O11Rik, Fam190a
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045354
    NCBI Gene: 232035
  • Alliance
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:61157308-62359849 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 29.24 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    6046 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045354
protein coding gene Chr6:61156942-62359849 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030826
protein coding gene Chr6:60929115-62201216 (+)
A/J MGP_AJ_G0030793
protein coding gene Chr6:58268185-59455796 (+)
AKR/J MGP_AKRJ_G0030721
protein coding gene Chr6:60197013-61404957 (+)
BALB/cJ MGP_BALBcJ_G0030804
protein coding gene Chr6:58674897-59881680 (+)
C3H/HeJ MGP_C3HHeJ_G0030519
protein coding gene Chr6:60229933-61486783 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031262
protein coding gene Chr6:62325648-63607790 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028454
protein coding gene Chr6:55813926-56943096 (+)
CAST/EiJ MGP_CASTEiJ_G0029916
protein coding gene Chr6:60306845-61557096 (+)
CBA/J MGP_CBAJ_G0030491
protein coding gene Chr6:64869523-66246863 (+)
DBA/2J MGP_DBA2J_G0030643
protein coding gene Chr6:57994004-59183302 (+)
FVB/NJ MGP_FVBNJ_G0030596
protein coding gene Chr6:57543389-58734960 (+)
LP/J MGP_LPJ_G0030727
protein coding gene Chr6:60881031-62136570 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030631
protein coding gene Chr6:67831667-69500604 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031288
protein coding gene Chr6:60096622-61312313 (+)
PWK/PhJ MGP_PWKPhJ_G0029631
protein coding gene Chr6:57166264-58360864 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029459
protein coding gene Chr6:59559562-60794737 (+)
WSB/EiJ MGP_WSBEiJ_G0029998
protein coding gene Chr6:60392849-61640046 (+)



Homology
more
  • Human Ortholog
    CCSER1, coiled-coil serine rich protein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCSER1, coiled-coil serine rich protein 1
  • Synonyms
    FAM190A
  • Links
    NCBI Gene ID: 401145
    neXtProt AC: NX_Q9C0I3
    UniProt: Q9C0I3

  • Chr Location
    4q22.1; chr4:90127394-91602219 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    23 phenotype references
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039578 Ensembl Gene Model | MGI Sequence Detail 1202542 C57BL/6J ±  kb
For the selected sequence
Protein
Information
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  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000031312 serine-rich coiled-coil domain-containing protein 1
  • InterPro Domains
    IPR029627 Serine-rich coiled-coil domain-containing protein
    IPR029628 Serine-rich coiled-coil domain-containing protein 1
Molecular
Reagents
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  • All nucleic 24
    cDNA 24

    Microarray probesets 3
Other
Accession IDs
less
MGI:3045349
References
more
  • Summaries
    All 42
    Developmental Gene Expression 1
    Phenotypes 23
  • Earliest
    J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5
  • Latest
    J:304297 Landy MA, et al., Loss of Prdm12 during development, but not in mature nociceptors, causes defects in pain sensation. Cell Rep. 2021 Mar 30;34(13):108913

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/17/2022
MGI 6.19
The Jackson Laboratory