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6820408C15Rik Gene Detail
Summary
  • Symbol
    6820408C15Rik
  • Name
    RIKEN cDNA 6820408C15 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045333
    NCBI Gene: 228778
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:152415587-152444330 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 74.99 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    181 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045333
protein coding gene Chr2:152415587-152444336 (.)
129S1/SvImJ MGP_129S1SvImJ_G0026660
protein coding gene Chr2:156955905-157002010 (+)
A/J MGP_AJ_G0026626
protein coding gene Chr2:150701660-150730001 (+)
AKR/J MGP_AKRJ_G0026596
protein coding gene Chr2:155100055-155132863 (+)
BALB/cJ MGP_BALBcJ_G0026635
protein coding gene Chr2:151011306-151040441 (+)
C3H/HeJ MGP_C3HHeJ_G0026378
protein coding gene Chr2:155483847-155513752 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027084
protein coding gene Chr2:161540157-161572930 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024455
protein coding gene Chr2:144290756-144319292 (+)
CAST/EiJ MGP_CASTEiJ_G0025839
protein coding gene Chr2:155717281-155747653 (+)
CBA/J MGP_CBAJ_G0026356
protein coding gene Chr2:167449611-167480257 (+)
DBA/2J MGP_DBA2J_G0026492
protein coding gene Chr2:149917668-149948030 (+)
FVB/NJ MGP_FVBNJ_G0026458
protein coding gene Chr2:148361111-148393960 (+)
LP/J MGP_LPJ_G0026596
protein coding gene Chr2:157115125-157146812 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026479
protein coding gene Chr2:171558488-171589966 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027140
protein coding gene Chr2:154985782-155016105 (+)
PWK/PhJ MGP_PWKPhJ_G0025573
protein coding gene Chr2:149434311-149464079 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025376
protein coding gene Chr2:153809022-153841182 (+)
WSB/EiJ MGP_WSBEiJ_G0025909
protein coding gene Chr2:155906892-155935894 (+)



Homology
more
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ1103G7.2
  • Links
    NCBI Gene ID: 140680
    neXtProt AC: NX_Q9NUD7
    UniProt: Q9NUD7

  • Chr Location
    20p13; chr20:270863-290778 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032680 Ensembl Gene Model | MGI Sequence Detail 28744 C57BL/6J ±  kb
transcript ENSMUST00000039961 Ensembl | MGI Sequence Detail 1684 Not Applicable  
polypeptide ENSMUSP00000037024 Ensembl | MGI Sequence Detail 354 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR029236 Protein of unknown function DUF4618
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
References
more
  • Summaries
    All 23
    Phenotypes 7
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory