About   Help   FAQ
Due to maintenance, access to MGI may be intermittent 7:30-8:30 AM EDT Thursday, May 28.
6820408C15Rik Gene Detail
Summary
  • Symbol
    6820408C15Rik
  • Name
    RIKEN cDNA 6820408C15 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:3045333
    NCBI Gene: 228778
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:152415587-152444330 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 74.99 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    181 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3045333
protein coding gene Chr2:152415587-152444336 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026660
protein coding gene Chr2:156955905-157002010 (+)
A/J MGP_AJ_G0026626
protein coding gene Chr2:150701660-150730001 (+)
AKR/J MGP_AKRJ_G0026596
protein coding gene Chr2:155100055-155132863 (+)
BALB/cJ MGP_BALBcJ_G0026635
protein coding gene Chr2:151011306-151040441 (+)
C3H/HeJ MGP_C3HHeJ_G0026378
protein coding gene Chr2:155483847-155513752 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027084
protein coding gene Chr2:161540157-161572930 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024455
protein coding gene Chr2:144290756-144319292 (+)
CAST/EiJ MGP_CASTEiJ_G0025839
protein coding gene Chr2:155717281-155747653 (+)
CBA/J MGP_CBAJ_G0026356
protein coding gene Chr2:167449611-167480257 (+)
DBA/2J MGP_DBA2J_G0026492
protein coding gene Chr2:149917668-149948030 (+)
FVB/NJ MGP_FVBNJ_G0026458
protein coding gene Chr2:148361111-148393960 (+)
LP/J MGP_LPJ_G0026596
protein coding gene Chr2:157115125-157146812 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026479
protein coding gene Chr2:171558488-171589966 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027140
protein coding gene Chr2:154985782-155016105 (+)
PWK/PhJ MGP_PWKPhJ_G0025573
protein coding gene Chr2:149434311-149464079 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025376
protein coding gene Chr2:153809022-153841182 (+)
WSB/EiJ MGP_WSBEiJ_G0025909
protein coding gene Chr2:155906892-155935894 (+)



Homology
more
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C20orf96, chromosome 20 open reading frame 96
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ1103G7.2
  • Links
    NCBI Gene ID: 140680
    neXtProt AC: NX_Q9NUD7
    UniProt: Q9NUD7

  • Chr Location
    20p13; chr20:270863-290778 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032680 Ensembl Gene Model | MGI Sequence Detail 28744 C57BL/6J ±  kb
transcript ENSMUST00000039961 Ensembl | MGI Sequence Detail 1684 Not Applicable  
polypeptide ENSMUSP00000037024 Ensembl | MGI Sequence Detail 354 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR029236 Protein of unknown function DUF4618
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
References
more
  • Summaries
    All 23
    Phenotypes 7
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/19/2020
MGI 6.15
The Jackson Laboratory